chr	start	stop	CF	MA.D_sorted.bam.counts	HA.D_sorted.bam.counts	MA.D_sorted.bam.rpkm	HA.D_sorted.bam.rpkm	MA.D_sorted.bam.rms	HA.D_sorted.bam.rms	MSets1.counts.mean	MSets1.rpkm.mean	MSets1.rms.mean	MSets2.counts.mean	MSets2.rpkm.mean	MSets2.rms.mean	edgeR.logFC	edgeR.logCPM	edgeR.p.value	edgeR.adj.p.value
chr10	1	1000000	18181	8124	14209	0.31	0.31	1	1	8124	0.31	1	14209	0.31	1	-0.00934232701988912	13.5006615742227	0.748356623241141	1
chr10	1000001	2000000	15736	9654	17432	0.37	0.38	1	1	9654	0.37	1	17432	0.38	1	-0.0553384083151134	13.7728191866217	0.0442162257914579	1
chr10	2000001	3000000	8427	11758	20972	0.45	0.46	1	1	11758	0.45	1	20972	0.46	1	-0.0376210317317801	14.048219211634	0.154382995247034	1
chr10	3000001	4000000	9232	12510	22096	0.47	0.48	1	1	12510	0.47	1	22096	0.48	1	-0.0235028172109412	14.1305118306284	0.368763992535107	1
chr10	4000001	5000000	10358	11502	21293	0.44	0.46	1	1	11502	0.44	1	21293	0.46	1	-0.0912933343908416	14.0439071414533	0.000546557154784129	0.038259000834889
chr10	5000001	6000000	14896	9738	17193	0.37	0.38	1	1	9738	0.37	1	17193	0.38	1	-0.0229232352821922	13.7688839543026	0.406091542082039	1
chr10	6000001	7000000	14188	9927	17599	0.38	0.38	1	1	9927	0.38	1	17599	0.38	1	-0.0288630470476121	13.7996094541254	0.292716449311795	1
chr10	7000001	8000000	15872	10277	17443	0.39	0.38	1	1	10277	0.39	1	17443	0.38	1	0.0339711367338855	13.8181934955802	0.213473773252992	1
chr10	8000001	9000000	16292	10336	17120	0.39	0.37	1	1	10336	0.39	1	17120	0.37	1	0.0691950950068616	13.809148839936	0.0112299019749078	0.786093138243544
chr10	9000001	10000000	17187	9779	16647	0.37	0.36	1	1	9779	0.37	1	16647	0.36	1	0.0296968067361926	13.7486575931203	0.28229359587302	1
chr10	10000001	11000000	19055	9378	15814	0.36	0.35	1	1	9378	0.36	1	15814	0.35	1	0.0433498737159811	13.6815176636426	0.120014593766881	1
chr10	11000001	12000000	20463	9190	15701	0.35	0.34	1	1	9190	0.35	1	15701	0.34	1	0.0244805215307639	13.6616335359155	0.382596350399183	1
chr10	12000001	13000000	16514	9196	15597	0.35	0.34	1	1	9196	0.35	1	15597	0.34	1	0.0350099060383961	13.6573628810642	0.211397667055089	1
chr10	13000001	14000000	15573	9837	16644	0.37	0.36	1	1	9837	0.37	1	16644	0.36	1	0.0384881998008843	13.7528427206817	0.16279843387979	1
chr10	14000001	15000000	17430	10174	16540	0.39	0.36	1	1	10174	0.39	1	16540	0.36	1	0.0961273204455202	13.7732763982279	0.000456072443263746	0.0319250710284622
chr10	15000001	16000000	15199	9503	16838	0.36	0.37	1	1	9503	0.36	1	16838	0.37	1	-0.0280651373272371	13.736241339225	0.311182101364025	1
chr10	16000001	17000000	14139	11703	18524	0.44	0.4	1	1	11703	0.44	1	18524	0.4	1	0.134682088347553	13.9567305318218	4.37345508560963e-07	3.06141855992674e-05
chr10	17000001	18000000	19868	8322	13705	0.32	0.3	1	1	8322	0.32	1	13705	0.3	1	0.0774994395055317	13.4924718248876	0.00699688654315311	0.489782058020718
chr10	18000001	19000000	16561	8899	15281	0.34	0.33	1	1	8899	0.34	1	15281	0.33	1	0.0171764445353161	13.6188461518047	0.543892683601989	1
chr10	19000001	20000000	16880	14713	22047	0.56	0.48	1	1	14713	0.56	1	22047	0.48	1	0.213708104772766	14.2497706875972	6.88971991857005e-17	4.82280394299904e-15
chr10	20000001	21000000	15435	9626	16817	0.37	0.37	1	1	9626	0.37	1	16817	0.37	1	-0.0077115156587224	13.7445489678113	0.782883011513016	1
chr10	21000001	22000000	11514	11007	18642	0.42	0.41	1	1	11007	0.42	1	18642	0.41	1	0.0370647994694037	13.9156541316875	0.168210690701607	1
chr10	22000001	23000000	13811	10036	17419	0.38	0.38	1	1	10036	0.38	1	17419	0.38	1	0.00172300475307047	13.7999925247678	0.952758742422725	1
chr10	23000001	24000000	27890	6339	9892	0.24	0.22	1	1	6339	0.24	1	9892	0.22	1	0.155191115806101	13.0625716702355	5.89291864336273e-07	4.12504305035391e-05
chr10	24000001	25000000	25240	15397	21317	0.58	0.47	1	1	15397	0.58	1	21317	0.47	1	0.327843125904554	14.2635812841455	9.77304080319764e-38	6.84112856223835e-36
chr10	25000001	26000000	11818	10527	19052	0.4	0.42	1	1	10527	0.4	1	19052	0.42	1	-0.0586471538813982	13.8993835137088	0.0296860156578848	1
chr10	26000001	27000000	12647	10272	18238	0.39	0.4	1	1	10272	0.39	1	18238	0.4	1	-0.0310297022812054	13.8499844598348	0.254152855192096	1
chr10	27000001	28000000	16161	9237	16211	0.35	0.35	1	1	9237	0.35	1	16211	0.35	1	-0.0142762269413726	13.688342050437	0.610705537045553	1
chr10	28000001	29000000	12568	9181	16175	0.35	0.35	1	1	9181	0.35	1	16175	0.35	1	-0.0198418618759885	13.6823705125711	0.478619522594686	1
chr10	29000001	30000000	12467	9503	17529	0.36	0.38	1	1	9503	0.36	1	17529	0.38	1	-0.0860875097091136	13.7658345453827	0.001762186777537	0.12335307442759
chr10	30000001	31000000	11627	9661	17469	0.37	0.38	1	1	9661	0.37	1	17469	0.38	1	-0.0573516115655536	13.7748912617291	0.0369777550819258	1
chr10	31000001	32000000	10115	10653	18902	0.4	0.41	1	1	10653	0.4	1	18902	0.41	1	-0.030078423332736	13.9020388283011	0.265267757462532	1
chr10	32000001	33000000	14234	9590	15861	0.36	0.35	1	1	9590	0.36	1	15861	0.35	1	0.0713187394606529	13.7000523629254	0.0102006207469961	0.714043452289726
chr10	33000001	34000000	10881	9991	16775	0.38	0.37	1	1	9991	0.38	1	16775	0.37	1	0.0495882101103418	13.7697832189732	0.0711636829238835	1
chr10	34000001	35000000	5217	12618	22869	0.48	0.5	1	1	12618	0.48	1	22869	0.5	1	-0.0607091479803431	14.1617904947918	0.0194934694769017	1
chr10	35000001	36000000	5137	12970	23713	0.49	0.52	1	1	12970	0.49	1	23713	0.52	1	-0.0732987632839042	14.2079232586533	0.00454080238660577	0.317856167062404
chr10	36000001	37000000	5391	12619	22377	0.48	0.49	1	1	12619	0.48	1	22377	0.49	1	-0.0292183878176095	14.1459106758103	0.262504274667935	1
chr10	37000001	38000000	5834	12265	22579	0.47	0.49	1	1	12265	0.47	1	22579	0.49	1	-0.0832333082094842	14.1324048456736	0.00142093682254423	0.0994655775780958
chr10	38000001	39000000	11033	9554	18229	0.36	0.4	1	1	9554	0.36	1	18229	0.4	1	-0.134856960402533	13.7988794847831	8.49355543258456e-07	5.94548880280919e-05
chr10	39000001	40000000	14013	9698	17298	0.37	0.38	1	1	9698	0.37	1	17298	0.38	1	-0.0376452861102067	13.770387004503	0.171572502225371	1
chr10	40000001	41000000	15198	8653	15573	0.33	0.34	1	1	8653	0.33	1	15573	0.34	1	-0.0505736134957297	13.6124920744319	0.0732364562762634	1
chr10	41000001	42000000	14105	10345	16655	0.39	0.36	1	1	10345	0.39	1	16655	0.36	1	0.110177728356865	13.790543543003	5.58669287561261e-05	0.00391068501292883
chr10	42000001	43000000	12326	10710	18696	0.41	0.41	1	1	10710	0.41	1	18696	0.41	1	-0.00657065542408697	13.8979048501177	0.810211779478434	1
chr10	43000001	44000000	12650	10028	17306	0.38	0.38	1	1	10028	0.38	1	17306	0.38	1	0.00996195030390188	13.7947299008637	0.718354930788695	1
chr10	44000001	45000000	13065	8853	16642	0.34	0.36	1	1	8853	0.34	1	16642	0.36	1	-0.113388924677056	13.677761469336	4.87108575664906e-05	0.00340976002965434
chr10	45000001	46000000	10250	11309	20471	0.43	0.45	1	1	11309	0.43	1	20471	0.45	1	-0.0589093007833666	14.0028799203273	0.026602434291466	1
chr10	46000001	47000000	12925	10382	17950	0.39	0.39	1	1	10382	0.39	1	17950	0.39	1	0.00730093223981186	13.8461001746317	0.790632504577873	1
chr10	47000001	48000000	13322	9609	16333	0.36	0.36	1	1	9609	0.36	1	16333	0.36	1	0.0318685400969388	13.722286067249	0.250445473548954	1
chr10	48000001	49000000	15129	9514	16893	0.36	0.37	1	1	9514	0.36	1	16893	0.37	1	-0.0311008831696863	13.7394439521193	0.26131208758606	1
chr10	49000001	50000000	9761	10894	19421	0.41	0.42	1	1	10894	0.41	1	19421	0.42	1	-0.0368829626201767	13.9377509809893	0.169405252621412	1
chr10	50000001	51000000	12837	10057	17460	0.38	0.38	1	1	10057	0.38	1	17460	0.38	1	0.00134689045455625	13.8031957355721	0.963707666222808	1
chr10	51000001	52000000	11673	10085	17962	0.38	0.39	1	1	10085	0.38	1	17962	0.39	1	-0.0355361479831785	13.8257621509691	0.193057460241746	1
chr10	52000001	53000000	12772	11300	18690	0.43	0.41	1	1	11300	0.43	1	18690	0.41	1	0.0712560610961362	13.936771399961	0.00777446203599354	0.544212342519548
chr10	53000001	54000000	13467	10448	18072	0.4	0.39	1	1	10448	0.4	1	18072	0.39	1	0.00667101553805382	13.8555555906658	0.808293640835367	1
chr10	54000001	55000000	10000	11546	20624	0.44	0.45	1	1	11546	0.44	1	20624	0.45	1	-0.0397302805914575	14.0230420441628	0.133905649225751	1
chr10	55000001	56000000	7412	11091	19965	0.42	0.44	1	1	11091	0.42	1	19965	0.44	1	-0.0508827631503871	13.970711216977	0.0566495927696488	1
chr10	56000001	57000000	14929	9998	16215	0.38	0.35	1	1	9998	0.38	1	16215	0.35	1	0.0995819145093799	13.7464349435302	0.000298827563586507	0.0209179294510555
chr10	57000001	58000000	19204	9206	16113	0.35	0.35	1	1	9206	0.35	1	16113	0.35	1	-0.0103782292527507	13.6815349757423	0.712545140168628	1
chr10	58000001	59000000	13293	11199	19706	0.42	0.43	1	1	11199	0.42	1	19706	0.43	1	-0.0180644536072977	13.9680805392865	0.500176815033365	1
chr10	59000001	60000000	18958	9165	15678	0.35	0.34	1	1	9165	0.35	1	15678	0.34	1	0.0226654755974892	13.6586045698184	0.419288930533542	1
chr10	60000001	61000000	22070	7832	13255	0.3	0.29	1	1	7832	0.3	1	13255	0.29	1	0.0381159973405539	13.4242421722312	0.191001179925531	1
chr10	61000001	62000000	10348	10433	18418	0.4	0.4	1	1	10433	0.4	1	18418	0.4	1	-0.0227616998172808	13.8682445439264	0.402131071999633	1
chr10	62000001	63000000	9295	13458	22636	0.51	0.49	1	1	13458	0.51	1	22636	0.49	1	0.0470451070725199	14.2007443327231	0.0685554221368949	1
chr10	63000001	64000000	24722	8749	14556	0.33	0.32	1	1	8749	0.33	1	14556	0.32	1	0.0627758550548383	13.5718334419753	0.0268811543543251	1
chr10	64000001	65000000	23551	8604	14327	0.33	0.31	1	1	8604	0.33	1	14327	0.31	1	0.0615426620833876	13.5483302536625	0.0306942338879604	1
chr10	65000001	66000000	25099	9263	14716	0.35	0.32	1	1	9263	0.35	1	14716	0.32	1	0.12936495087139	13.6219842934808	4.08032796574202e-06	0.000285622957601941
chr10	66000001	67000000	28575	9124	13804	0.35	0.3	1	1	9124	0.35	1	13804	0.3	1	0.199850275354937	13.5669270803651	1.66623265276661e-12	1.16636285693662e-10
chr10	67000001	68000000	28401	8017	13923	0.3	0.3	1	1	8017	0.3	1	13923	0.3	1	0.000864713977705539	13.4764244585477	0.979691746867138	1
chr10	68000001	69000000	35657	7567	12229	0.29	0.27	1	1	7567	0.29	1	12229	0.27	1	0.104686052352967	13.3421169417399	0.000385603529395842	0.0269922470577089
chr10	69000001	70000000	7346	3709	6469	0.14	0.14	1	1	3709	0.14	1	6469	0.14	1	-0.00531186654672056	12.367790415575	0.890162413528477	1
