chr	start	stop	CF	MA.D_sorted.bam.counts	HA.D_sorted.bam.counts	MA.D_sorted.bam.rpkm	HA.D_sorted.bam.rpkm	MA.D_sorted.bam.rms	HA.D_sorted.bam.rms	MSets1.counts.mean	MSets1.rpkm.mean	MSets1.rms.mean	MSets2.counts.mean	MSets2.rpkm.mean	MSets2.rms.mean	edgeR.logFC	edgeR.logCPM	edgeR.p.value	edgeR.adj.p.value
chr11	1	1000000	30747	7734	13532	0.29	0.3	1	1	7734	0.29	1	13532	0.3	1	0.0114656368356137	13.1177107770264	0.696469776969838	1
chr11	1000001	2000000	35114	7517	13062	0.29	0.29	1	1	7517	0.29	1	13062	0.29	1	0.0214070202413162	13.071716376991	0.46761690514264	1
chr11	2000001	3000000	33340	7327	13375	0.28	0.29	1	1	7327	0.28	1	13375	0.29	1	-0.0496895835031407	13.0705257607278	0.0910677017146679	1
chr11	3000001	4000000	28445	7288	13648	0.28	0.3	1	1	7288	0.28	1	13648	0.3	1	-0.086539460760145	13.0816944555051	0.00316616719950184	0.253293375960147
chr11	4000001	5000000	30463	6725	12000	0.26	0.26	1	1	6725	0.26	1	12000	0.26	1	-0.0168738232094547	12.9302596827017	0.578497112645863	1
chr11	5000001	6000000	24900	7651	14320	0.29	0.31	1	1	7651	0.29	1	14320	0.31	1	-0.0857560958555027	13.1514019217968	0.00306727750308575	0.24538220024686
chr11	6000001	7000000	24156	8002	14608	0.3	0.32	1	1	8002	0.3	1	14608	0.32	1	-0.0497713993925033	13.197680542396	0.0834051629940881	1
chr11	7000001	8000000	19204	9562	16414	0.36	0.36	1	1	9562	0.36	1	16414	0.36	1	0.0390112624789366	13.4101005079155	0.159390169024357	1
chr11	8000001	9000000	16073	9865	16914	0.37	0.37	1	1	9865	0.37	1	16914	0.37	1	0.0407268777275837	13.4542544120274	0.138985907509693	1
chr11	9000001	10000000	12552	10536	18188	0.4	0.4	1	1	10536	0.4	1	18188	0.4	1	0.0308942575866672	13.5540343555095	0.254784231000193	1
chr11	10000001	11000000	10345	10979	18804	0.42	0.41	1	1	10979	0.42	1	18804	0.41	1	0.0422609005576846	13.6078330714471	0.115948610989757	1
chr11	11000001	12000000	11804	11376	19870	0.43	0.43	1	1	11376	0.43	1	19870	0.43	1	0.0139555701595849	13.6730919485342	0.601947726289513	1
chr11	12000001	13000000	13081	10449	19326	0.4	0.42	1	1	10449	0.4	1	19326	0.42	1	-0.0686234234197683	13.5921715734189	0.0109280384636244	0.874243077089956
chr11	13000001	14000000	8844	12747	22772	0.48	0.5	1	1	12747	0.48	1	22772	0.5	1	-0.0185489403761558	13.8535057502456	0.476624912459609	1
chr11	14000001	15000000	13348	10479	18715	0.4	0.41	1	1	10479	0.4	1	18715	0.41	1	-0.0181396598715691	13.5706789627064	0.504099176926629	1
chr11	15000001	16000000	17831	9857	16269	0.37	0.35	1	1	9857	0.37	1	16269	0.35	1	0.095648231516459	13.4262634638569	0.000526282474461556	0.0421025979569245
chr11	16000001	17000000	17502	9285	16806	0.35	0.37	1	1	9285	0.35	1	16806	0.37	1	-0.0374480296358032	13.405927848733	0.177682143132356	1
chr11	17000001	18000000	10434	12058	20587	0.46	0.45	1	1	12058	0.46	1	20587	0.45	1	0.0468108503418522	13.7408201058617	0.0758204773773035	1
chr11	18000001	19000000	12821	10651	18704	0.4	0.41	1	1	10651	0.4	1	18704	0.41	1	0.00619618488286981	13.5819670710404	0.82090492506741	1
chr11	19000001	20000000	13557	8929	15745	0.34	0.34	1	1	8929	0.34	1	15745	0.34	1	0.000230939792540957	13.3305666289403	0.996760686413384	1
chr11	20000001	21000000	12668	9500	17591	0.36	0.38	1	1	9500	0.36	1	17591	0.38	1	-0.0702832424363753	13.4556771323124	0.0106917714883642	0.855341719069135
chr11	21000001	22000000	18874	8028	15172	0.3	0.33	1	1	8028	0.3	1	15172	0.33	1	-0.0997434847938243	13.2280014218297	0.000483070297779115	0.0386456238223292
chr11	22000001	23000000	14972	9258	16901	0.35	0.37	1	1	9258	0.35	1	16901	0.37	1	-0.0497814805000074	13.4079889940894	0.0728763925979452	1
chr11	23000001	24000000	15917	8933	16104	0.34	0.35	1	1	8933	0.34	1	16104	0.35	1	-0.0316479091357604	13.3472440803758	0.259455871920411	1
chr11	24000001	25000000	14988	9054	16924	0.34	0.37	1	1	9054	0.34	1	16924	0.37	1	-0.0838883806754522	13.3933025855739	0.00255398499313522	0.204318799450818
chr11	25000001	26000000	17132	8591	15866	0.33	0.35	1	1	8591	0.33	1	15866	0.35	1	-0.0664856084956231	13.3086556392013	0.0183851090634528	1
chr11	26000001	27000000	14439	8506	15911	0.32	0.35	1	1	8506	0.32	1	15911	0.35	1	-0.0849166900443252	13.3037731882973	0.00261759296216427	0.209407436973141
chr11	27000001	28000000	7515	11775	20952	0.45	0.46	1	1	11775	0.45	1	20952	0.46	1	-0.0128066228240675	13.7362012865206	0.629581701301386	1
chr11	28000001	29000000	5025	13764	23843	0.52	0.52	1	1	13764	0.52	1	23843	0.52	1	0.0258880381247309	13.9420404970836	0.313813322325846	1
chr11	29000001	30000000	4950	14031	23759	0.53	0.52	1	1	14031	0.53	1	23759	0.52	1	0.0586975171686974	13.953587778983	0.0219197364768267	1
chr11	30000001	31000000	5198	14175	25208	0.54	0.55	1	1	14175	0.54	1	25208	0.55	1	-0.0119786639843527	14.0033768265191	0.639996687005981	1
chr11	31000001	32000000	4923	13645	24947	0.52	0.54	1	1	13645	0.52	1	24947	0.54	1	-0.0519394177750423	13.9686121299134	0.0424947195274363	1
chr11	32000001	33000000	6416	12888	21739	0.49	0.47	1	1	12888	0.49	1	21739	0.47	1	0.0642965443210971	13.828270435046	0.0135163182232369	1
chr11	33000001	34000000	5880	12170	21384	0.46	0.47	1	1	12170	0.46	1	21384	0.47	1	0.00535156969411014	13.7747045578477	0.840748162936791	1
chr11	34000001	35000000	4214	13462	23582	0.51	0.51	1	1	13462	0.51	1	23582	0.51	1	0.00976080104236865	13.9180524171168	0.706443323555514	1
chr11	35000001	36000000	4632	13384	23841	0.51	0.52	1	1	13384	0.51	1	23841	0.52	1	-0.0143811188680029	13.9217531976128	0.578094718636645	1
chr11	36000001	37000000	3378	14430	26324	0.55	0.57	1	1	14430	0.55	1	26324	0.57	1	-0.0487529424401666	14.047681066795	0.0544795263621477	1
chr11	37000001	38000000	3693	14442	24745	0.55	0.54	1	1	14442	0.55	1	24745	0.54	1	0.0416874247027711	14.0035953873719	0.101669926835461	1
chr11	38000001	39000000	4758	14127	23890	0.54	0.52	1	1	14127	0.54	1	23890	0.52	1	0.060602062542012	13.9624913038959	0.0178390644922199	1
chr11	39000001	40000000	4825	14006	24211	0.53	0.53	1	1	14006	0.53	1	24211	0.53	1	0.0289363190217981	13.9656731273953	0.258614081024208	1
chr11	40000001	41000000	4062	13526	22447	0.51	0.49	1	1	13526	0.51	1	22447	0.49	1	0.0877661935408167	13.8865415634146	0.000674885677013436	0.0539908541610749
chr11	41000001	42000000	4003	13665	22877	0.52	0.5	1	1	13665	0.52	1	22877	0.5	1	0.0751412582885257	13.9074260945613	0.00352619426191592	0.282095540953273
chr11	42000001	43000000	4341	13735	23853	0.52	0.52	1	1	13735	0.52	1	23853	0.52	1	0.0222402210977171	13.9408070257004	0.387186951205872	1
chr11	43000001	44000000	5183	14067	24413	0.53	0.53	1	1	14067	0.53	1	24413	0.53	1	0.0232191264631059	13.9747755669975	0.364462775737062	1
chr11	44000001	45000000	7623	12045	21421	0.46	0.47	1	1	12045	0.46	1	21421	0.47	1	-0.0120371634351904	13.7685181302328	0.648940418311352	1
chr11	45000001	46000000	10599	10483	18988	0.4	0.41	1	1	10483	0.4	1	18988	0.41	1	-0.0384818000139974	13.5815031374516	0.154534655685226	1
chr11	46000001	47000000	10098	10957	20210	0.42	0.44	1	1	10957	0.42	1	20210	0.44	1	-0.0646617695066788	13.6586227730595	0.0154545302746606	1
chr11	47000001	48000000	12681	10179	18890	0.39	0.41	1	1	10179	0.39	1	18890	0.41	1	-0.0734720450587249	13.5568927276504	0.00671803922604492	0.537443138083594
chr11	48000001	49000000	8740	11743	21244	0.45	0.46	1	1	11743	0.45	1	21244	0.46	1	-0.0366999484305782	13.744327827341	0.16445982059326	1
chr11	49000001	50000000	10388	11542	20949	0.44	0.46	1	1	11542	0.44	1	20949	0.46	1	-0.0414336381281202	13.7218226889807	0.117597988954048	1
chr11	50000001	51000000	11151	11560	20599	0.44	0.45	1	1	11560	0.44	1	20599	0.45	1	-0.0148786041103382	13.7106601748886	0.576256861780987	1
chr11	51000001	52000000	11089	11127	20176	0.42	0.44	1	1	11127	0.42	1	20176	0.44	1	-0.0400210020234799	13.6682845995346	0.133640491983166	1
chr11	52000001	53000000	8371	12092	21828	0.46	0.48	1	1	12092	0.46	1	21828	0.48	1	-0.0335726322986585	13.7849913578411	0.200984964988776	1
chr11	53000001	54000000	5418	14136	25073	0.54	0.55	1	1	14136	0.54	1	25073	0.55	1	-0.00820644429892166	13.9975093471828	0.749583952018005	1
chr11	54000001	55000000	5047	14092	24134	0.53	0.53	1	1	14092	0.53	1	24134	0.53	1	0.0423632386695495	13.9678716420351	0.097737533046421	1
chr11	55000001	56000000	5088	13495	24160	0.51	0.53	1	1	13495	0.51	1	24160	0.53	1	-0.0216411496860409	13.9373209857441	0.400763010326273	1
chr11	56000001	57000000	5190	14091	24489	0.53	0.53	1	1	14091	0.53	1	24489	0.53	1	0.0211941834101547	13.9782395303883	0.407728590241415	1
chr11	57000001	58000000	6001	14047	23775	0.53	0.52	1	1	14047	0.53	1	23775	0.52	1	0.0593705015804089	13.9549021470047	0.0204237946631161	1
chr11	58000001	59000000	5615	13390	23544	0.51	0.51	1	1	13390	0.51	1	23544	0.51	1	0.00435066802313764	13.9130154995973	0.868099952537582	1
chr11	59000001	60000000	5833	13924	23666	0.53	0.52	1	1	13924	0.53	1	23666	0.52	1	0.0533116665054643	13.9451860271718	0.0376310207709733	1
chr11	60000001	61000000	7475	12727	22575	0.48	0.49	1	1	12727	0.48	1	22575	0.49	1	-0.00827935664306569	13.8460808056684	0.752392646121367	1
chr11	61000001	62000000	7125	12549	22264	0.48	0.49	1	1	12549	0.48	1	22264	0.49	1	-0.00858616406760483	13.8259170498519	0.74414107550304	1
chr11	62000001	63000000	9384	12069	20578	0.46	0.45	1	1	12069	0.46	1	20578	0.45	1	0.0487571844726957	13.741178159816	0.0643766535473166	1
chr11	63000001	64000000	14077	10213	18226	0.39	0.4	1	1	10213	0.39	1	18226	0.4	1	-0.0170369279725233	13.5330349957656	0.532917010442547	1
chr11	64000001	65000000	13989	6406	12459	0.24	0.27	1	1	6406	0.24	1	12459	0.27	1	-0.141136491549745	12.9240231309725	2.95451295454224e-06	0.000236361036363379
chr11	65000001	66000000	11921	10176	17619	0.39	0.38	1	1	10176	0.39	1	17619	0.38	1	0.0265924776659197	13.5060146441882	0.330830319372411	1
chr11	66000001	67000000	15130	9345	16647	0.35	0.36	1	1	9345	0.35	1	16647	0.36	1	-0.0144413164552302	13.4036087793217	0.605114602765975	1
chr11	67000001	68000000	22367	8694	14239	0.33	0.31	1	1	8694	0.33	1	14239	0.31	1	0.106797201642691	13.2397801583987	0.000172976373974975	0.013838109917998
chr11	68000001	69000000	19229	9993	16758	0.38	0.37	1	1	9993	0.38	1	16758	0.37	1	0.0726932896745999	13.4571764604895	0.00814070664463955	0.651256531571164
chr11	69000001	70000000	16949	9429	17970	0.36	0.39	1	1	9429	0.36	1	17970	0.39	1	-0.111858514083034	13.4663055776007	4.71318455637183e-05	0.00377054764509746
chr11	70000001	71000000	14983	10299	18815	0.39	0.41	1	1	10299	0.39	1	18815	0.41	1	-0.0508244034477916	13.5622279058014	0.060676263241817	1
chr11	71000001	72000000	14345	10850	18617	0.41	0.41	1	1	10850	0.41	1	18617	0.41	1	0.0396282805236347	13.592081657587	0.141465159113298	1
chr11	72000001	73000000	10578	11864	20087	0.45	0.44	1	1	11864	0.45	1	20087	0.44	1	0.0588821156572702	13.7114960190356	0.0260635686847827	1
chr11	73000001	74000000	15118	10085	18141	0.38	0.4	1	1	10085	0.38	1	18141	0.4	1	-0.0284884636543408	13.5206145768385	0.296809584872767	1
chr11	74000001	75000000	17939	9429	17021	0.36	0.37	1	1	9429	0.36	1	17021	0.37	1	-0.0335846185811823	13.4261711208496	0.225351964550597	1
chr11	75000001	76000000	16985	10640	18237	0.4	0.4	1	1	10640	0.4	1	18237	0.4	1	0.0411835552242895	13.563121481028	0.128110127136022	1
chr11	76000001	77000000	28592	7504	12824	0.28	0.28	1	1	7504	0.28	1	12824	0.28	1	0.0454390300657297	13.0573379474298	0.122677149310855	1
chr11	77000001	78000000	43263	6315	10194	0.24	0.22	1	1	6315	0.24	1	10194	0.22	1	0.127686652500418	12.7686000379966	3.80017316388053e-05	0.00304013853110443
chr11	78000001	79000000	44797	5970	8919	0.23	0.19	1	1	5970	0.23	1	8919	0.19	1	0.239399205874331	12.6352244097718	4.97448184482742e-14	3.97958547586193e-12
chr11	79000001	80000000	3029	1635	2531	0.06	0.06	1	1	1635	0.06	1	2531	0.06	1	0.188126194747697	10.7913340735675	0.000213011159170973	0.0170408927336779
