chr	start	stop	CF	MA.D_sorted.bam.counts	HA.D_sorted.bam.counts	MA.D_sorted.bam.rpkm	HA.D_sorted.bam.rpkm	MA.D_sorted.bam.rms	HA.D_sorted.bam.rms	MSets1.counts.mean	MSets1.rpkm.mean	MSets1.rms.mean	MSets2.counts.mean	MSets2.rpkm.mean	MSets2.rms.mean	edgeR.logFC	edgeR.logCPM	edgeR.p.value	edgeR.adj.p.value
chr17	1	1000000	9623	10417	19773	0.4	0.43	1	1	10417	0.4	1	19773	0.43	1	-0.103707430613254	14.1405872561218	0.000115973000803208	0.00742227205140531
chr17	1000001	2000000	7448	11729	20683	0.44	0.45	1	1	11729	0.44	1	20683	0.45	1	0.00251816093932229	14.2576467514381	0.92666714900927	1
chr17	2000001	3000000	5744	12418	22375	0.47	0.49	1	1	12418	0.47	1	22375	0.49	1	-0.028571016636695	14.3556081666188	0.274269092078444	1
chr17	3000001	4000000	5971	11615	20070	0.44	0.44	1	1	11615	0.44	1	20070	0.44	1	0.0318319100958634	14.2289841777104	0.230827941413807	1
chr17	4000001	5000000	6892	12816	22097	0.49	0.48	1	1	12816	0.49	1	22097	0.48	1	0.0349789108981974	14.369368974333	0.17924245192501	1
chr17	5000001	6000000	10243	10805	19302	0.41	0.42	1	1	10805	0.41	1	19302	0.42	1	-0.0161675121038752	14.1486484772646	0.549169837050799	1
chr17	6000001	7000000	5884	12828	24763	0.49	0.54	1	1	12828	0.49	1	24763	0.54	1	-0.128005360617637	14.4535423984343	6.76468382071979e-07	4.32939764526066e-05
chr17	7000001	8000000	9497	10718	20247	0.41	0.44	1	1	10718	0.41	1	20247	0.44	1	-0.096788026059253	14.1780963889773	0.000297694497817417	0.0190524478603147
chr17	8000001	9000000	11360	9775	17317	0.37	0.38	1	1	9775	0.37	1	17317	0.38	1	-0.00413675019669166	13.9981002261273	0.883488748352144	1
chr17	9000001	10000000	11397	9252	16980	0.35	0.37	1	1	9252	0.35	1	16980	0.37	1	-0.05511513656849	13.9445397262068	0.0469326099125014	1
chr17	10000001	11000000	18596	7260	12039	0.28	0.26	1	1	7260	0.28	1	12039	0.26	1	0.0912083424911089	13.5220734646414	0.00216921097010637	0.138829502086808
chr17	11000001	12000000	16086	8822	14662	0.33	0.32	1	1	8822	0.33	1	14662	0.32	1	0.0879784487065612	13.8047276711857	0.00188021384282086	0.120333685940535
chr17	12000001	13000000	14173	7612	13215	0.29	0.29	1	1	7612	0.29	1	13215	0.29	1	0.0250543647711931	13.6227914772272	0.393305241932596	1
chr17	13000001	14000000	10750	11447	20476	0.43	0.45	1	1	11447	0.43	1	20476	0.45	1	-0.0180805964421216	14.2328704689582	0.497297574525696	1
chr17	14000001	15000000	12542	9490	17682	0.36	0.39	1	1	9490	0.36	1	17682	0.39	1	-0.0769171376243078	13.9923302320045	0.00519235907237416	0.332310980631946
chr17	15000001	16000000	8043	10242	18222	0.39	0.4	1	1	10242	0.39	1	18222	0.4	1	-0.010300136521655	14.068509617021	0.707302963239036	1
chr17	16000001	17000000	7250	11515	21444	0.44	0.47	1	1	11515	0.44	1	21444	0.47	1	-0.0761754237206366	14.270943186922	0.00391347687804926	0.250462520195152
chr17	17000001	18000000	8112	10912	20748	0.41	0.45	1	1	10912	0.41	1	20748	0.45	1	-0.106172254591188	14.2088307479398	6.73178730686975e-05	0.00430834387639664
chr17	18000001	19000000	9724	9829	18588	0.37	0.41	1	1	9829	0.37	1	18588	0.41	1	-0.0983705029195167	14.0540141730704	0.000307592818680303	0.0196859403955394
chr17	19000001	20000000	10512	9738	18264	0.37	0.4	1	1	9738	0.37	1	18264	0.4	1	-0.0864209574673576	14.0344294590375	0.00157259125370546	0.100645840237149
chr17	20000001	21000000	7098	11125	20560	0.42	0.45	1	1	11125	0.42	1	20560	0.45	1	-0.0651507879493855	14.2155921363745	0.0143655565381969	0.919395618444602
chr17	21000001	22000000	7711	10565	19279	0.4	0.42	1	1	10565	0.4	1	19279	0.42	1	-0.04685343639076	14.1317613014279	0.0821536288818585	1
chr17	22000001	23000000	7612	12042	21300	0.46	0.46	1	1	12042	0.46	1	21300	0.46	1	-0.00189477064563833	14.2978439170683	0.945338780282575	1
chr17	23000001	24000000	5647	12572	21878	0.48	0.48	1	1	12572	0.48	1	21878	0.48	1	0.021616785060935	14.3482573464277	0.408635070567735	1
chr17	24000001	25000000	7099	10745	18718	0.41	0.41	1	1	10745	0.41	1	18718	0.41	1	0.0201226428050274	14.1224783005283	0.456718233673338	1
chr17	25000001	26000000	10670	9714	17271	0.37	0.38	1	1	9714	0.37	1	17271	0.38	1	-0.00933051703274576	13.9916740876587	0.73721832359255	1
chr17	26000001	27000000	15624	8222	14833	0.31	0.32	1	1	8222	0.31	1	14833	0.32	1	-0.0303651845509723	13.7617305976976	0.289084457035477	1
chr17	27000001	28000000	14554	8459	15307	0.32	0.33	1	1	8459	0.32	1	15307	0.33	1	-0.0347485416312218	13.8049382419719	0.221400657440624	1
chr17	28000001	29000000	18001	8385	14836	0.32	0.32	1	1	8385	0.32	1	14836	0.32	1	-0.00233583583629268	13.7759479955116	0.938360286180748	1
chr17	29000001	30000000	18246	8167	14639	0.31	0.32	1	1	8167	0.31	1	14639	0.32	1	-0.021055018354119	13.7473509861471	0.464258531029433	1
chr17	30000001	31000000	20979	7135	11823	0.27	0.26	1	1	7135	0.27	1	11823	0.26	1	0.0922715957308975	13.4965070668445	0.00202082606932275	0.129332868436656
chr17	31000001	32000000	13351	9859	17696	0.37	0.39	1	1	9859	0.37	1	17696	0.39	1	-0.023026231901347	14.0199350298307	0.402052352527384	1
chr17	32000001	33000000	16051	9025	15784	0.34	0.34	1	1	9025	0.34	1	15784	0.34	1	0.014419453893919	13.8736835948698	0.609075876918254	1
chr17	33000001	34000000	17386	8338	14271	0.32	0.31	1	1	8338	0.32	1	14271	0.31	1	0.0455699674156657	13.7440578025264	0.11169256724762	1
chr17	34000001	35000000	17306	8401	13920	0.32	0.3	1	1	8401	0.32	1	13920	0.3	1	0.0923563581250453	13.7320726340296	0.0012662909062637	0.0810426180008767
chr17	35000001	36000000	16413	8924	15319	0.34	0.33	1	1	8924	0.34	1	15319	0.33	1	0.0413234937558181	13.8441230703422	0.14247835319715	1
chr17	36000001	37000000	17774	7872	13710	0.3	0.3	1	1	7872	0.3	1	13710	0.3	1	0.0204569412240522	13.673518721646	0.482358188360154	1
chr17	37000001	38000000	12594	10258	17662	0.39	0.39	1	1	10258	0.39	1	17662	0.39	1	0.0369840501111003	14.0472215824165	0.175220766723893	1
chr17	38000001	39000000	12375	10742	17622	0.41	0.38	1	1	10742	0.41	1	17622	0.38	1	0.106767645915032	14.0796926009058	8.04223329175288e-05	0.00514702930672184
chr17	39000001	40000000	14099	9390	15821	0.36	0.35	1	1	9390	0.36	1	15821	0.35	1	0.0682392222492198	13.9043395774869	0.0143044842437794	0.915486991601879
chr17	40000001	41000000	15746	8464	15321	0.32	0.33	1	1	8464	0.32	1	15321	0.33	1	-0.0352149378315569	13.8060267025478	0.215156868007633	1
chr17	41000001	42000000	16925	8462	14661	0.32	0.32	1	1	8462	0.32	1	14661	0.32	1	0.0279704018344095	13.7740424277732	0.327363453276469	1
chr17	42000001	43000000	10502	9799	17563	0.37	0.38	1	1	9799	0.37	1	17563	0.38	1	-0.0209490500082824	14.0100827392587	0.446764452529847	1
chr17	43000001	44000000	14393	9037	15225	0.34	0.33	1	1	9037	0.34	1	15225	0.33	1	0.0683565227479059	13.8490093000494	0.0150321399305246	0.962056955553578
chr17	44000001	45000000	11134	9298	16680	0.35	0.36	1	1	9298	0.35	1	16680	0.36	1	-0.0222431202286179	13.93503235513	0.424657368546614	1
chr17	45000001	46000000	12650	8615	16452	0.33	0.36	1	1	8615	0.33	1	16452	0.36	1	-0.112455517524064	13.8711540632348	6.14338163950647e-05	0.00393176424928414
chr17	46000001	47000000	16706	8197	14140	0.31	0.31	1	1	8197	0.31	1	14140	0.31	1	0.0342690236041249	13.7250310229566	0.233677248290779	1
chr17	47000001	48000000	18986	7980	14117	0.3	0.31	1	1	7980	0.3	1	14117	0.31	1	-0.00208923616914241	13.7044151623255	0.946121035285387	1
chr17	48000001	49000000	19909	7802	13174	0.3	0.29	1	1	7802	0.3	1	13174	0.29	1	0.0651052999383769	13.6386327546309	0.0255275582404917	1
chr17	49000001	50000000	19021	7961	13069	0.3	0.29	1	1	7961	0.3	1	13069	0.29	1	0.10575519037249	13.6480017441627	0.000274172598523333	0.0175470463054933
chr17	50000001	51000000	18046	8634	14709	0.33	0.32	1	1	8634	0.33	1	14709	0.32	1	0.0522848962418078	13.7910754811443	0.0656848359571271	1
chr17	51000001	52000000	17094	8990	14419	0.34	0.31	1	1	8990	0.34	1	14419	0.31	1	0.139304060888005	13.8072768243242	8.24490388930514e-07	5.27673848915529e-05
chr17	52000001	53000000	22088	8243	13445	0.31	0.29	1	1	8243	0.31	1	13445	0.29	1	0.115053954841253	13.69373989357	6.57126187092302e-05	0.00420560759739073
chr17	53000001	54000000	16555	9373	16944	0.36	0.37	1	1	9373	0.36	1	16944	0.37	1	-0.0333077660995888	13.9522082725031	0.229807181171197	1
chr17	54000001	55000000	17386	9634	16130	0.37	0.35	1	1	9634	0.37	1	16130	0.35	1	0.077343268323502	13.9369052812344	0.00524212652031262	0.335496097300007
chr17	55000001	56000000	15718	9490	17442	0.36	0.38	1	1	9490	0.36	1	17442	0.38	1	-0.0572013278522402	13.9822403817952	0.0380199149971593	1
chr17	56000001	57000000	13507	9400	18242	0.36	0.4	1	1	9400	0.36	1	18242	0.4	1	-0.135646381498144	14.0090391298277	7.78681662308818e-07	4.98356263877644e-05
chr17	57000001	58000000	27325	6603	11587	0.25	0.25	1	1	6603	0.25	1	11587	0.25	1	0.0095699574224385	13.4253779707477	0.755919720382843	1
chr17	58000001	59000000	32839	6667	10739	0.25	0.23	1	1	6667	0.25	1	10739	0.23	1	0.133131706961324	13.3790078633835	1.29904968118309e-05	0.000831391795957181
chr17	59000001	60000000	25550	7692	13823	0.29	0.3	1	1	7692	0.29	1	13823	0.3	1	-0.0247561780070279	13.6627854931579	0.396164234823059	1
chr17	60000001	61000000	26101	7181	13356	0.27	0.29	1	1	7181	0.27	1	13356	0.29	1	-0.0743467959275793	13.5888619430696	0.0116430150844996	0.745152965407974
chr17	61000001	62000000	46898	5324	7868	0.2	0.17	1	1	5324	0.2	1	7868	0.17	1	0.25739245384191	12.9965775230173	5.64715144589884e-15	3.61417692537526e-13
chr17	62000001	63000000	50217	4977	6385	0.19	0.14	1	1	4977	0.19	1	6385	0.14	1	0.461463516230899	12.809887945044	2.39060029226647e-41	1.52998418705054e-39
chr17	63000001	64000000	7200	11041	20826	0.42	0.45	1	1	11041	0.42	1	20826	0.45	1	-0.0946305531747548	14.2198106792979	0.000373558660550108	0.0239077542752069
