chr	start	stop	CF	MA.D_sorted.bam.counts	HA.D_sorted.bam.counts	MA.D_sorted.bam.rpkm	HA.D_sorted.bam.rpkm	MA.D_sorted.bam.rms	HA.D_sorted.bam.rms	MSets1.counts.mean	MSets1.rpkm.mean	MSets1.rms.mean	MSets2.counts.mean	MSets2.rpkm.mean	MSets2.rms.mean	edgeR.logFC	edgeR.logCPM	edgeR.p.value	edgeR.adj.p.value
chr18	1	1000000	26245	7755	13728	0.29	0.3	1	1	7755	0.29	1	13728	0.3	1	-0.0275049432625108	13.7197338855145	0.345121943597904	1
chr18	1000001	2000000	37480	6364	10481	0.24	0.23	1	1	6364	0.24	1	10481	0.23	1	0.0766457462145753	13.3829455023532	0.0130380811784825	0.730132545995019
chr18	2000001	3000000	34233	6378	10322	0.24	0.23	1	1	6378	0.24	1	10322	0.23	1	0.101869462604258	13.3738870648281	0.000978072465521215	0.054772058069188
chr18	3000001	4000000	27898	6215	11520	0.24	0.25	1	1	6215	0.24	1	11520	0.25	1	-0.0938955768691305	13.4343379248399	0.0021738907902587	0.121737884254487
chr18	4000001	5000000	23074	7624	13849	0.29	0.3	1	1	7624	0.29	1	13849	0.3	1	-0.0647435164661975	13.7140835326494	0.026029409982368	1
chr18	5000001	6000000	25599	8441	14091	0.32	0.31	1	1	8441	0.32	1	14091	0.31	1	0.057128706667567	13.7998843480574	0.0458473617545505	1
chr18	6000001	7000000	25753	7942	13102	0.3	0.29	1	1	7942	0.3	1	13102	0.29	1	0.0742038438179303	13.7036412678886	0.0107032238342328	0.599380534717037
chr18	7000001	8000000	13120	8801	16144	0.33	0.35	1	1	8801	0.33	1	16144	0.35	1	-0.0788404136459139	13.9283902324801	0.00492377516981097	0.275731409509414
chr18	8000001	9000000	14461	9682	16928	0.37	0.37	1	1	9682	0.37	1	16928	0.37	1	-0.00961693542592722	14.0308529653111	0.729916367640989	1
chr18	9000001	10000000	19978	8748	15296	0.33	0.33	1	1	8748	0.33	1	15296	0.33	1	-0.00971169446729938	13.8845720443945	0.733776178861134	1
chr18	10000001	11000000	20768	8189	14369	0.31	0.31	1	1	8189	0.31	1	14369	0.31	1	-0.0147827975494218	13.7918698594769	0.608827251643388	1
chr18	11000001	12000000	12593	10192	17826	0.39	0.39	1	1	10192	0.39	1	17826	0.39	1	-0.0101282304468563	14.1051587751921	0.712694353194595	1
chr18	12000001	13000000	8507	11540	20561	0.44	0.45	1	1	11540	0.44	1	20561	0.45	1	-0.0368494134412963	14.297813076976	0.164686489211838	1
chr18	13000001	14000000	13265	9927	16945	0.38	0.37	1	1	9927	0.38	1	16945	0.37	1	0.0249873361211526	14.0496391706253	0.364187061929439	1
chr18	14000001	15000000	14101	10021	17538	0.38	0.38	1	1	10021	0.38	1	17538	0.38	1	-0.0110401444389002	14.0812093877726	0.688989935406444	1
chr18	15000001	16000000	13636	10471	18952	0.4	0.41	1	1	10471	0.4	1	18952	0.41	1	-0.0595328585948912	14.1691222706419	0.027478744935079	1
chr18	16000001	17000000	17906	9082	15283	0.34	0.33	1	1	9082	0.34	1	15283	0.33	1	0.0455712163759379	13.9111413657659	0.104822620395429	1
chr18	17000001	18000000	14261	10513	17499	0.4	0.38	1	1	10513	0.4	1	17499	0.38	1	0.0613189000446265	14.1144729642097	0.0240753452929244	1
chr18	18000001	19000000	12817	11002	18405	0.42	0.4	1	1	11002	0.42	1	18405	0.4	1	0.0540851081835893	14.1836013959692	0.0444294419310915	1
chr18	19000001	20000000	16715	10239	16461	0.39	0.36	1	1	10239	0.39	1	16461	0.36	1	0.11143931240128	14.0520606519482	4.7844332157166e-05	0.0026792826008013
chr18	20000001	21000000	19261	9077	15161	0.34	0.33	1	1	9077	0.34	1	15161	0.33	1	0.0563394767549384	13.9050561660333	0.0450277105265012	1
chr18	21000001	22000000	7605	12233	21200	0.46	0.46	1	1	12233	0.46	1	21200	0.46	1	0.00313147051725043	14.3618256583326	0.90747634144206	1
chr18	22000001	23000000	6233	13743	24410	0.52	0.53	1	1	13743	0.52	1	24410	0.53	1	-0.0323576063513806	14.5475635284951	0.207038863769261	1
chr18	23000001	24000000	8683	13123	22405	0.5	0.49	1	1	13123	0.5	1	22405	0.49	1	0.0246941743137018	14.4524015548849	0.341558739906202	1
chr18	24000001	25000000	10074	12015	21737	0.46	0.47	1	1	12015	0.46	1	21737	0.47	1	-0.0588982480365053	14.3672089160815	0.0248193707047886	1
chr18	25000001	26000000	10275	12532	21636	0.48	0.47	1	1	12532	0.48	1	21636	0.47	1	0.00860031673572635	14.3939304852996	0.744079845617891	1
chr18	26000001	27000000	7190	13420	23751	0.51	0.52	1	1	13420	0.51	1	23751	0.52	1	-0.0271858949682264	14.5106419322453	0.2916245622305	1
chr18	27000001	28000000	5298	14319	25528	0.54	0.56	1	1	14319	0.54	1	25528	0.56	1	-0.0377320265201014	14.6095113623547	0.137986139714273	1
chr18	28000001	29000000	7511	12890	22100	0.49	0.48	1	1	12890	0.49	1	22100	0.48	1	0.0186232686437482	14.4295724646422	0.475077612639881	1
chr18	29000001	30000000	6964	13459	23405	0.51	0.51	1	1	13459	0.51	1	23405	0.51	1	-0.00182802317067056	14.5020826780649	0.945991038336362	1
chr18	30000001	31000000	5586	14169	24597	0.54	0.54	1	1	14169	0.54	1	24597	0.54	1	0.000673077960565947	14.5749904841474	0.98125198354049	1
chr18	31000001	32000000	7089	13604	23749	0.52	0.52	1	1	13604	0.52	1	23749	0.52	1	-0.00741829887268585	14.5203408979253	0.775036803561793	1
chr18	32000001	33000000	5537	14312	24686	0.54	0.54	1	1	14312	0.54	1	24686	0.54	1	0.00994964807905753	14.5848456681277	0.697954946015884	1
chr18	33000001	34000000	10593	10939	19375	0.41	0.42	1	1	10939	0.41	1	19375	0.42	1	-0.0282977102904809	14.2163357926949	0.292030661459573	1
chr18	34000001	35000000	8258	12313	21927	0.47	0.48	1	1	12313	0.47	1	21927	0.48	1	-0.0361083574760274	14.3909651169652	0.167785750295968	1
chr18	35000001	36000000	5960	13685	23887	0.52	0.52	1	1	13685	0.52	1	23887	0.52	1	-0.00721268506576366	14.5288014106227	0.780935174529709	1
chr18	36000001	37000000	9749	11538	20103	0.44	0.44	1	1	11538	0.44	1	20103	0.44	1	-0.00460010068657287	14.2813186637226	0.865157878584053	1
chr18	37000001	38000000	12621	10330	18164	0.39	0.4	1	1	10330	0.39	1	18164	0.4	1	-0.0178240236291115	14.1284266508395	0.513430768411283	1
chr18	38000001	39000000	10082	12123	21173	0.46	0.46	1	1	12123	0.46	1	21173	0.46	1	-0.00806137380367604	14.3543982475448	0.761369566358605	1
chr18	39000001	40000000	10474	11133	19560	0.42	0.43	1	1	11133	0.42	1	19560	0.43	1	-0.0166463202253075	14.2358213883957	0.535181639103713	1
chr18	40000001	41000000	12404	10966	19822	0.42	0.43	1	1	10966	0.42	1	19822	0.43	1	-0.0576471780188552	14.2347887620514	0.031116679502736	1
chr18	41000001	42000000	13078	10118	18288	0.38	0.4	1	1	10118	0.38	1	18288	0.4	1	-0.0575551476171484	14.1186453058426	0.0344208236867017	1
chr18	42000001	43000000	16983	9083	15545	0.34	0.34	1	1	9083	0.34	1	15545	0.34	1	0.0212074611157208	13.923345073344	0.450940530223181	1
chr18	43000001	44000000	15470	9551	16763	0.36	0.37	1	1	9551	0.36	1	16763	0.37	1	-0.0151390155702738	14.013976371863	0.586150604696704	1
chr18	44000001	45000000	15452	9963	17143	0.38	0.37	1	1	9963	0.38	1	17143	0.37	1	0.013449911101688	14.0605928282358	0.625961981664553	1
chr18	45000001	46000000	18606	9927	17195	0.38	0.38	1	1	9927	0.38	1	17195	0.38	1	0.00385805346500672	14.0601540981664	0.891017334896404	1
chr18	46000001	47000000	16806	9931	16964	0.38	0.37	1	1	9931	0.38	1	16964	0.37	1	0.023951799254245	14.0507338217896	0.384416186755468	1
chr18	47000001	48000000	15365	8811	15374	0.33	0.34	1	1	8811	0.33	1	15374	0.34	1	-0.00669732541147772	13.8934109001318	0.815398238578356	1
chr18	48000001	49000000	20796	8523	14186	0.32	0.31	1	1	8523	0.32	1	14186	0.31	1	0.0613822199697303	13.8117456044009	0.0315330294186854	1
chr18	49000001	50000000	21768	8479	14488	0.32	0.32	1	1	8479	0.32	1	14488	0.32	1	0.0235248312095992	13.8229365092983	0.410754490797861	1
chr18	50000001	51000000	29860	7733	11514	0.29	0.25	1	1	7733	0.29	1	11514	0.25	1	0.222125671491089	13.5949753077752	5.7639472520904e-14	3.22781046117063e-12
chr18	51000001	52000000	17421	9856	16581	0.37	0.36	1	1	9856	0.37	1	16581	0.36	1	0.0459602173245173	14.0289244559198	0.0954568865725963	1
chr18	52000001	53000000	21135	9535	15817	0.36	0.35	1	1	9535	0.36	1	15817	0.35	1	0.0662457108582864	13.9712133313014	0.0171510740579685	0.960460147246235
chr18	53000001	54000000	18916	10244	17801	0.39	0.39	1	1	10244	0.39	1	17801	0.39	1	-0.00076161696578071	14.1078062466053	0.980960070274972	1
chr18	54000001	55000000	21203	9978	17438	0.38	0.38	1	1	9978	0.38	1	17438	0.38	1	-0.00899442000743549	14.0739796888346	0.745249424392104	1
chr18	55000001	56000000	26858	8571	13808	0.33	0.3	1	1	8571	0.33	1	13808	0.3	1	0.108447379510323	13.7969976977865	0.000147688917132671	0.00827057935942959
