chr	start	stop	CF	MA.D_sorted.bam.counts	HA.D_sorted.bam.counts	MA.D_sorted.bam.rpkm	HA.D_sorted.bam.rpkm	MA.D_sorted.bam.rms	HA.D_sorted.bam.rms	MSets1.counts.mean	MSets1.rpkm.mean	MSets1.rms.mean	MSets2.counts.mean	MSets2.rpkm.mean	MSets2.rms.mean	edgeR.logFC	edgeR.logCPM	edgeR.p.value	edgeR.adj.p.value
chr7	1	1000000	39291	7085	11265	0.27	0.25	1	1	7085	0.27	1	11265	0.25	1	0.119814169020111	12.4005456008842	6.7264849450576e-05	0.00820631163297028
chr7	1000001	2000000	37020	7232	11221	0.27	0.24	1	1	7232	0.27	1	11221	0.24	1	0.155086595674956	12.4133622939043	2.27735048056376e-07	2.77836758628778e-05
chr7	2000001	3000000	33290	7134	11844	0.27	0.26	1	1	7134	0.27	1	11844	0.26	1	0.0574493127884396	12.4407254754475	0.0546733939517634	1
chr7	3000001	4000000	29676	7409	12556	0.28	0.27	1	1	7409	0.28	1	12556	0.27	1	0.0277967980566485	12.5098956860543	0.347841000547992	1
chr7	4000001	5000000	28555	6802	11441	0.26	0.25	1	1	6802	0.26	1	11441	0.25	1	0.038640567617025	12.3812390611361	0.201988799473354	1
chr7	5000001	6000000	19456	8582	15903	0.33	0.35	1	1	8582	0.33	1	15903	0.35	1	-0.101088757132861	12.7871739487694	0.000331455720165179	0.0404375978601518
chr7	6000001	7000000	12466	10906	19605	0.41	0.43	1	1	10906	0.41	1	19605	0.43	1	-0.0572757689043803	13.1103416056926	0.0324889759614237	1
chr7	7000001	8000000	20092	8748	15833	0.33	0.35	1	1	8748	0.33	1	15833	0.35	1	-0.0670854871410416	12.7973063180442	0.0170491345613376	1
chr7	8000001	9000000	13866	10698	18854	0.41	0.41	1	1	10698	0.41	1	18854	0.41	1	-0.0287059404332588	13.0680632194186	0.287582903720866	1
chr7	9000001	10000000	19279	8300	15164	0.31	0.33	1	1	8300	0.31	1	15164	0.33	1	-0.0806429135066683	12.7284323873677	0.00457854775971174	0.558582826684833
chr7	10000001	11000000	18369	9045	15954	0.34	0.35	1	1	9045	0.34	1	15954	0.35	1	-0.0299021347215444	12.8265556887605	0.286191232383452	1
chr7	11000001	12000000	17168	9073	16081	0.34	0.35	1	1	9073	0.34	1	16081	0.35	1	-0.0368818513905121	12.8345454031553	0.187461598951243	1
chr7	12000001	13000000	14355	9862	17410	0.37	0.38	1	1	9862	0.37	1	17410	0.38	1	-0.0311404182646078	12.9519215469454	0.256997301310933	1
chr7	13000001	14000000	12875	10215	18166	0.39	0.4	1	1	10215	0.39	1	18166	0.4	1	-0.0417278716831629	13.0080130080569	0.125177419891933	1
chr7	14000001	15000000	6281	11913	21313	0.45	0.47	1	1	11913	0.45	1	21313	0.47	1	-0.0503731919325799	13.2342228716857	0.0556263916398192	1
chr7	15000001	16000000	10223	10774	18786	0.41	0.41	1	1	10774	0.41	1	18786	0.41	1	-0.0132804910959383	13.0705038387951	0.624046482916517	1
chr7	16000001	17000000	10214	10914	19472	0.41	0.42	1	1	10914	0.41	1	19472	0.42	1	-0.0463974004370224	13.1058611221361	0.0835280753830459	1
chr7	17000001	18000000	8833	11831	20928	0.45	0.46	1	1	11831	0.45	1	20928	0.46	1	-0.0340388241056533	13.2159708875598	0.197365818208195	1
chr7	18000001	19000000	5530	13176	23523	0.5	0.51	1	1	13176	0.5	1	23523	0.51	1	-0.0473359410900316	13.378036340617	0.06669703184174	1
chr7	19000001	20000000	11997	10129	17622	0.38	0.38	1	1	10129	0.38	1	17622	0.38	1	-0.0100624912545982	12.9798382777082	0.715003249171026	1
chr7	20000001	21000000	12077	10585	18367	0.4	0.4	1	1	10585	0.4	1	18367	0.4	1	-0.00627133705360713	13.0414572962008	0.819415056146682	1
chr7	21000001	22000000	12926	11214	18593	0.43	0.41	1	1	11214	0.43	1	18593	0.41	1	0.0593642506783454	13.0922013560006	0.0268300949321025	1
chr7	22000001	23000000	15749	8867	13225	0.34	0.29	1	1	8867	0.34	1	13225	0.29	1	0.212071237392761	12.6806729732128	1.08806031442495e-13	1.32743358359844e-11
chr7	23000001	24000000	21207	8748	13262	0.33	0.29	1	1	8748	0.33	1	13262	0.29	1	0.18854799552995	12.6721338373856	4.27990870476321e-11	5.22148861981112e-09
chr7	24000001	25000000	16570	9935	17367	0.38	0.38	1	1	9935	0.38	1	17367	0.38	1	-0.0169331940449644	12.9553948930521	0.538630124451994	1
chr7	25000001	26000000	12564	11147	19487	0.42	0.43	1	1	11147	0.42	1	19487	0.43	1	-0.0170330379989439	13.121485327861	0.525719017192774	1
chr7	26000001	27000000	10674	11226	19755	0.43	0.43	1	1	11226	0.43	1	19755	0.43	1	-0.026550326651006	13.1364682085803	0.320542111580564	1
chr7	27000001	28000000	9708	11878	21297	0.45	0.46	1	1	11878	0.45	1	21297	0.46	1	-0.0535345359343067	13.2315880697811	0.0420052207642845	1
chr7	28000001	29000000	13176	10624	19454	0.4	0.42	1	1	10624	0.4	1	19454	0.42	1	-0.0839157273604213	13.0862010315145	0.0017930829621241	0.21875612137914
chr7	29000001	30000000	22419	8484	14342	0.32	0.31	1	1	8484	0.32	1	14342	0.31	1	0.0313933008794704	12.70354555205	0.272111519422111	1
chr7	30000001	31000000	20184	8023	13178	0.3	0.29	1	1	8023	0.3	1	13178	0.29	1	0.0729047567056988	12.6025683985267	0.0119684892689307	1
chr7	31000001	32000000	16305	9280	15508	0.35	0.34	1	1	9280	0.35	1	15508	0.34	1	0.0480069286157557	12.8247096420183	0.0860576632708048	1
chr7	32000001	33000000	15484	8910	14705	0.34	0.32	1	1	8910	0.34	1	14705	0.32	1	0.0660131982760854	12.7571911262724	0.0194782502150858	1
chr7	33000001	34000000	13428	9803	16994	0.37	0.37	1	1	9803	0.37	1	16994	0.37	1	-0.00490685563912042	12.9300635052445	0.861525857956224	1
chr7	34000001	35000000	14764	8992	16002	0.34	0.35	1	1	8992	0.34	1	16002	0.35	1	-0.0427145205863464	12.82456736746	0.127339778302101	1
chr7	35000001	36000000	14431	7991	14133	0.3	0.31	1	1	7991	0.3	1	14133	0.31	1	-0.0337960546996729	12.6498118075635	0.2419342713798	1
chr7	36000001	37000000	19855	8107	12734	0.31	0.28	1	1	8107	0.31	1	12734	0.28	1	0.137376089864164	12.586518105657	2.24944347948547e-06	0.000274432104497227
chr7	37000001	38000000	16493	9446	15384	0.36	0.34	1	1	9446	0.36	1	15384	0.34	1	0.0851672620302877	12.8321270872942	0.00226188670690409	0.275950178242299
chr7	38000001	39000000	20573	8058	12275	0.31	0.27	1	1	8058	0.31	1	12275	0.27	1	0.181591825438823	12.5568770303179	4.86476838234353e-10	5.93501742645911e-08
chr7	39000001	40000000	17170	8961	15185	0.34	0.33	1	1	8961	0.34	1	15185	0.33	1	0.027907787223549	12.7841730953859	0.322555563693233	1
chr7	40000001	41000000	15444	9237	15903	0.35	0.35	1	1	9237	0.35	1	15903	0.35	1	0.00502061733573671	12.8393126568602	0.860164204855186	1
chr7	41000001	42000000	14624	8868	14939	0.34	0.33	1	1	8868	0.34	1	14939	0.33	1	0.0364200556191175	12.7649144614833	0.197671076206107	1
chr7	42000001	43000000	11148	10869	19285	0.41	0.42	1	1	10869	0.41	1	19285	0.42	1	-0.0384362740378039	13.0958611452069	0.152432534931817	1
chr7	43000001	44000000	10284	10644	18819	0.4	0.41	1	1	10644	0.4	1	18819	0.41	1	-0.033325928868185	13.0630989667528	0.217113436399813	1
chr7	44000001	45000000	9566	11599	19863	0.44	0.43	1	1	11599	0.44	1	19863	0.43	1	0.0127401329079728	13.1639215060585	0.633255294930716	1
chr7	45000001	46000000	9259	10810	18748	0.41	0.41	1	1	10810	0.41	1	18748	0.41	1	-0.00554678945118129	13.071435263021	0.83957470273148	1
chr7	46000001	47000000	14453	9271	16071	0.35	0.35	1	1	9271	0.35	1	16071	0.35	1	-0.00483944755858444	12.8495437948094	0.865361144409997	1
chr7	47000001	48000000	15402	8313	14164	0.32	0.31	1	1	8313	0.32	1	14164	0.31	1	0.0200354858401973	12.6798054440385	0.486245353841246	1
chr7	48000001	49000000	14079	9221	15507	0.35	0.34	1	1	9221	0.35	1	15507	0.34	1	0.0388984622514704	12.8199965769241	0.164873397415865	1
chr7	49000001	50000000	18374	8477	13578	0.32	0.3	1	1	8477	0.32	1	13578	0.3	1	0.109176815995806	12.664396376415	0.000140022471930768	0.0170827415755537
chr7	50000001	51000000	13536	10511	16504	0.4	0.36	1	1	10511	0.4	1	16504	0.36	1	0.13790628383481	12.9608716170753	4.38592503246373e-07	5.35082853960575e-05
chr7	51000001	52000000	10973	11157	18630	0.42	0.41	1	1	11157	0.42	1	18630	0.41	1	0.0491444093006424	13.0898656770071	0.067043860075524	1
chr7	52000001	53000000	14318	9645	15669	0.37	0.34	1	1	9645	0.37	1	15669	0.34	1	0.0887625043387264	12.8604564118194	0.00138721153454936	0.169239807215022
chr7	53000001	54000000	17804	9011	14989	0.34	0.33	1	1	9011	0.34	1	14989	0.33	1	0.0546777612095893	12.7790014624153	0.0522412533082537	1
chr7	54000001	55000000	15523	8964	15486	0.34	0.34	1	1	8964	0.34	1	15486	0.34	1	7.33464125126218e-05	12.7985101230718	1	1
chr7	55000001	56000000	16604	9300	15237	0.35	0.33	1	1	9300	0.35	1	15237	0.33	1	0.0765463072599639	12.8138487116703	0.00622740733751497	0.759743695176826
chr7	56000001	57000000	9428	12224	21354	0.46	0.47	1	1	12224	0.46	1	21354	0.47	1	-0.0159664306743946	13.2539929045324	0.544438344478069	1
chr7	57000001	58000000	12765	10000	16660	0.38	0.36	1	1	10000	0.38	1	16660	0.36	1	0.0524344503435591	12.9303211654503	0.0564696601152753	1
chr7	58000001	59000000	14907	9662	15723	0.37	0.34	1	1	9662	0.37	1	15723	0.34	1	0.0863397395195595	12.8641716874154	0.00186019156091186	0.226943370431247
chr7	59000001	60000000	13118	9429	15189	0.36	0.33	1	1	9429	0.36	1	15189	0.33	1	0.100972111706254	12.8218784921594	0.000299750042386464	0.0365695051711486
chr7	60000001	61000000	9944	11690	19991	0.44	0.44	1	1	11690	0.44	1	19991	0.44	1	0.0147475130034747	13.1741954429389	0.579772074535368	1
chr7	61000001	62000000	7173	12871	22657	0.49	0.49	1	1	12871	0.49	1	22657	0.49	1	-0.0270091696760758	13.3339554862215	0.298814498762281	1
chr7	62000001	63000000	7927	13359	23529	0.51	0.51	1	1	13359	0.51	1	23529	0.51	1	-0.0278044592366044	13.3880387500797	0.281311978404891	1
chr7	63000001	64000000	8680	12571	21902	0.48	0.48	1	1	12571	0.48	1	21902	0.48	1	-0.0121397701086816	13.2924479732016	0.64371711575182	1
chr7	64000001	65000000	10370	11913	20610	0.45	0.45	1	1	11913	0.45	1	20610	0.45	1	-0.00198438245730427	13.209803371875	0.942886744838977	1
chr7	65000001	66000000	10536	11153	18704	0.42	0.41	1	1	11153	0.42	1	18704	0.41	1	0.0429079745826111	13.0924177259417	0.109817688901818	1
chr7	66000001	67000000	6839	13346	22798	0.51	0.5	1	1	13346	0.51	1	22798	0.5	1	0.0163233700510557	13.3645218350945	0.5288543921363	1
chr7	67000001	68000000	7086	12672	22626	0.48	0.49	1	1	12672	0.48	1	22626	0.49	1	-0.0475136372588131	13.3218650305521	0.0677089553069149	1
chr7	68000001	69000000	8858	12537	21996	0.48	0.48	1	1	12537	0.48	1	21996	0.48	1	-0.0222255255126392	13.2936152061296	0.395479954356286	1
chr7	69000001	70000000	6184	13532	23806	0.51	0.52	1	1	13532	0.51	1	23806	0.52	1	-0.0261266342508009	13.4057528302002	0.310328989152799	1
chr7	70000001	71000000	5226	14540	25149	0.55	0.55	1	1	14540	0.55	1	25149	0.55	1	-0.00165041514820627	13.4970946280819	0.950625327812813	1
chr7	71000001	72000000	4148	15238	26372	0.58	0.58	1	1	15238	0.58	1	26372	0.58	1	-0.00251007057169618	13.5651644647018	0.922928733504754	1
chr7	72000001	73000000	4829	15069	26153	0.57	0.57	1	1	15069	0.57	1	26153	0.57	1	-0.00656938574981579	13.551109375364	0.796714192841088	1
chr7	73000001	74000000	5330	12325	22276	0.47	0.49	1	1	12325	0.47	1	22276	0.49	1	-0.0650787374794758	13.2907690638207	0.0126814804442406	1
chr7	74000001	75000000	10559	10904	18481	0.41	0.4	1	1	10904	0.41	1	18481	0.4	1	0.0276377506192957	13.0673914041927	0.30552330598628	1
chr7	75000001	76000000	17185	9081	14668	0.34	0.32	1	1	9081	0.34	1	14668	0.32	1	0.0970732368412068	12.769516113728	0.00056939578466392	0.0694662857289983
chr7	76000001	77000000	12108	10384	17258	0.39	0.38	1	1	10384	0.39	1	17258	0.38	1	0.0559198429029957	12.9829654325112	0.0402440286237154	1
chr7	77000001	78000000	9776	12454	20510	0.47	0.45	1	1	12454	0.47	1	20510	0.45	1	0.0691045120352127	13.2387286405769	0.00847525241942148	1
chr7	78000001	79000000	10595	10911	19388	0.41	0.42	1	1	10911	0.41	1	19388	0.42	1	-0.0405569795838501	13.1024996275039	0.130634759820352	1
chr7	79000001	80000000	4887	15581	27311	0.59	0.6	1	1	15581	0.59	1	27311	0.6	1	-0.0208708478077831	13.6064949048878	0.406294919267417	1
chr7	80000001	81000000	10131	10622	19189	0.4	0.42	1	1	10622	0.4	1	19189	0.42	1	-0.0644002115746074	13.0759185662576	0.0167381029483939	1
chr7	81000001	82000000	7598	11502	20218	0.44	0.44	1	1	11502	0.44	1	20218	0.44	1	-0.0249320101063604	13.1706878157385	0.348637059931932	1
chr7	82000001	83000000	6532	12794	22750	0.49	0.5	1	1	12794	0.49	1	22750	0.5	1	-0.0415755228804874	13.332671020779	0.109462371028359	1
chr7	83000001	84000000	8700	12100	21462	0.46	0.47	1	1	12100	0.46	1	21462	0.47	1	-0.0379538524606485	13.2503842251312	0.148557192751821	1
chr7	84000001	85000000	8099	12080	21386	0.46	0.47	1	1	12080	0.46	1	21386	0.47	1	-0.0352226094445808	13.2466146836557	0.180320226588877	1
chr7	85000001	86000000	9590	10886	18344	0.41	0.4	1	1	10886	0.41	1	18344	0.4	1	0.0359887147975111	13.0608776253258	0.182139439716279	1
chr7	86000001	87000000	10244	9808	16948	0.37	0.37	1	1	9808	0.37	1	16948	0.37	1	-0.000260806768947593	12.9284732779259	0.995856060417612	1
chr7	87000001	88000000	8145	10780	18824	0.41	0.41	1	1	10780	0.41	1	18824	0.41	1	-0.0153925769424603	13.0723684994931	0.569457052080986	1
chr7	88000001	89000000	12473	10607	17388	0.4	0.38	1	1	10607	0.4	1	17388	0.38	1	0.0757473412185305	13.003925281224	0.00528027170183195	0.644193147623498
chr7	89000001	90000000	9866	10753	17829	0.41	0.39	1	1	10753	0.41	1	17829	0.39	1	0.0593362536022275	13.03166106892	0.0283023626956942	1
chr7	90000001	91000000	6967	12661	21710	0.48	0.47	1	1	12661	0.48	1	21710	0.47	1	0.0108548928588553	13.2912362460591	0.679218591639578	1
chr7	91000001	92000000	13137	9996	17437	0.38	0.38	1	1	9996	0.38	1	17437	0.38	1	-0.013905574856586	12.9627021922155	0.61370176237963	1
chr7	92000001	93000000	16692	8836	13923	0.34	0.3	1	1	8836	0.34	1	13923	0.3	1	0.132817117846189	12.7128976279715	2.96224295766533e-06	0.00036139364083517
chr7	93000001	94000000	14910	9729	16490	0.37	0.36	1	1	9729	0.37	1	16490	0.36	1	0.0275951088533342	12.9029414813074	0.318614465117228	1
chr7	94000001	95000000	11616	11075	18836	0.42	0.41	1	1	11075	0.42	1	18836	0.41	1	0.0226372226808297	13.0923168340135	0.399956873456086	1
chr7	95000001	96000000	12298	9971	17611	0.38	0.38	1	1	9971	0.38	1	17611	0.38	1	-0.0318430955470491	12.9681323719191	0.245183604893917	1
chr7	96000001	97000000	14323	9888	17521	0.38	0.38	1	1	9888	0.38	1	17521	0.38	1	-0.0365107951962807	12.9584368689647	0.183190151694251	1
chr7	97000001	98000000	15919	9715	15920	0.37	0.35	1	1	9715	0.37	1	15920	0.35	1	0.0762681666190559	12.8769582224739	0.00589499878548308	0.719189851828936
chr7	98000001	99000000	15235	9652	15874	0.37	0.35	1	1	9652	0.37	1	15874	0.35	1	0.0710567589051243	12.8701135055172	0.0104017788824813	1
chr7	99000001	100000000	14504	9284	16170	0.35	0.35	1	1	9284	0.35	1	16170	0.35	1	-0.0116777957291557	12.8549950294243	0.677533600601618	1
chr7	100000001	101000000	16711	8697	14642	0.33	0.32	1	1	8697	0.33	1	14642	0.32	1	0.0373000518401414	12.7363935733685	0.189142461982964	1
chr7	101000001	102000000	9233	10732	18851	0.41	0.41	1	1	10732	0.41	1	18851	0.41	1	-0.0238985544141625	13.0702142117851	0.376147158350398	1
chr7	102000001	103000000	7253	12107	21109	0.46	0.46	1	1	12107	0.46	1	21109	0.46	1	-0.0131933722530714	13.238725714608	0.617672863293814	1
chr7	103000001	104000000	6667	12923	22061	0.49	0.48	1	1	12923	0.49	1	22061	0.48	1	0.0172660513958454	13.3175918773476	0.507904876654937	1
chr7	104000001	105000000	7330	11694	20385	0.44	0.44	1	1	11694	0.44	1	20385	0.44	1	-0.0129160191502105	13.1885196755678	0.627637428937207	1
chr7	105000001	106000000	5785	12646	22894	0.48	0.5	1	1	12646	0.48	1	22894	0.5	1	-0.0674646072998529	13.3290785803592	0.00939359760503897	1
chr7	106000001	107000000	6287	12700	22005	0.48	0.48	1	1	12700	0.48	1	22005	0.48	1	-0.00417950414877639	13.3031830608998	0.875093599535074	1
chr7	107000001	108000000	7900	12115	21978	0.46	0.48	1	1	12115	0.46	1	21978	0.48	1	-0.0704418415118934	13.2687240183786	0.00714495372733366	0.871684354734706
chr7	108000001	109000000	6698	12076	22769	0.46	0.5	1	1	12076	0.46	1	22769	0.5	1	-0.126104011728233	13.2928573054412	1.36058360005425e-06	0.000165991199206618
chr7	109000001	110000000	9085	11062	20377	0.42	0.44	1	1	11062	0.42	1	20377	0.44	1	-0.0925053366057522	13.1489049809629	0.000513247486100435	0.0626161933042531
chr7	110000001	111000000	12699	9454	16880	0.36	0.37	1	1	9454	0.36	1	16880	0.37	1	-0.0474943408229252	12.8992663284498	0.0861032804228646	1
chr7	111000001	112000000	17567	9492	16198	0.36	0.35	1	1	9492	0.36	1	16198	0.35	1	0.0177914816402161	12.8722321418875	0.523272315743571	1
chr7	112000001	113000000	18775	9064	15646	0.34	0.34	1	1	9064	0.34	1	15646	0.34	1	0.00124922402088208	12.8139247443859	0.967698364100387	1
chr7	113000001	114000000	15294	9811	17443	0.37	0.38	1	1	9811	0.37	1	17443	0.38	1	-0.0413523697207832	12.9496141556377	0.132097985917386	1
chr7	114000001	115000000	18570	8820	15186	0.33	0.33	1	1	8820	0.33	1	15186	0.33	1	0.00493193674206504	12.7727220133609	0.864290077051697	1
chr7	115000001	116000000	18188	7600	12991	0.29	0.28	1	1	7600	0.29	1	12991	0.28	1	0.0153819891569037	12.5527725504098	0.602105616410391	1
chr7	116000001	117000000	22566	7188	12644	0.27	0.28	1	1	7188	0.27	1	12644	0.28	1	-0.0259669577871769	12.4930998084239	0.382761741993588	1
chr7	117000001	118000000	17663	8234	13998	0.31	0.31	1	1	8234	0.31	1	13998	0.31	1	0.023267719987932	12.6644275320455	0.419550387940658	1
chr7	118000001	119000000	16172	8277	14818	0.31	0.32	1	1	8277	0.31	1	14818	0.32	1	-0.0513469772461213	12.7094421539299	0.0721031422544666	1
chr7	119000001	120000000	13742	9508	16319	0.36	0.36	1	1	9508	0.36	1	16319	0.36	1	0.00948440296345598	12.878796734847	0.734819939558888	1
chr7	120000001	121000000	28051	6990	11565	0.27	0.25	1	1	6990	0.27	1	11565	0.25	1	0.0624215987639132	12.4088770081198	0.0379057568790188	1
chr7	121000001	122000000	27492	7171	11172	0.27	0.24	1	1	7171	0.27	1	11172	0.24	1	0.149180075685279	12.4039431793105	6.73907414099811e-07	8.22167045201769e-05
