Attack the enemy silently in its own den: SIGS - Spray-induced gene silencing, a novel approach to contain pathogens
SPRAY-INDUCED GENE SILENCING - A NOVEL APPROACH TO CONTAIN PATHOGENS
441 / 3
Keywords:
dsRNA, Gene silencing, HIGS, RNA interference, SIGSAbstract
RNAinterference (RNAi) technology is considered an alternative tool to develop more environmentally friendly broad-spectrumpesticides in agriculture. In this approach, sequence-specific knockdown of gene targets in pests and pathogensusing double-strandedRNA(dsRNA) is utilized. Two different dsRNAapplicationmethods, host induced gene silencing (HIGS) and spray induced gene silencing (SIGS) are being followed. HIGS involves developing transgenic plants that produce the intended dsRNA which will be delivered into the pests when they feed or grow on the transgenic plants, while in SIGS the dsRNAs applied topically on the plants will be taken up by the target organisms. Once the dsRNA is in the target organism, the host RNAi cellular machinery will be used to silence the target genes. SIGS has been applied now against many pests and diseases in different crops and has given promising results. With the development of tools that facilitate economic production of large scale dsRNA and improve the stability and longevity of the sprayed dsRNAs on the plant surface, SIGS is a promising technology that could be adopted across crops and against different pests and pathogens. In this research update, we provide a summary of the recent developments in the area of SIGS with an emphasis on the examples of fungal pathogen control.
Downloads
References
Álvarez Sánchez A R, Quinones R C, Quijano RR, Reyes A G, Barraza A, Barajas M F, Angulo C, Mejía-Ruíz C H 2018. Production of specific dsRNA against white spot syndrome virus in the yeast Yarrowia lipolytica. Aquacuture Research, 49: 480-491. DOI: https://doi.org/10.1111/are.13479
Andersen E J, Ali S, Byamukama E, Yen Y, and Nepal M P 2018. Disease Resistance Mechanisms in Plants. Genes, 9(7): 339. DOI: https://doi.org/10.3390/genes9070339
Dalakouras A, Wassenegger M, McMillan J N, Cardoza V, Maegele I, Dadami E, Runne M, Krczal G and Wassenegger M 2016. Induction of Silencing in Plants by High-Pressure Spraying of In vitro-Synthesized Small RNAs. Frontiers in Plant Science, 7: 1327. DOI: https://doi.org/10.3389/fpls.2016.01327
Das P R and Sherif S M 2020. Application of exogenous dsRNAs-induced RNAi in agriculture: challenges and triumphs. Frontiers in Plant Science, 11: 946. DOI: https://doi.org/10.3389/fpls.2020.00946
Dean, R., Van Kan, J.L., Pretorius, Z.A., Hammond-Kosack, K.E., Di Pietro, A., Spanu, P.D., Rudd, J.J., Dickman, M., Kahmann, R., Ellis, J., et al. The Top 10 fungal pathogens in molecular plant pathology. Mol. Plant Pathol. 2012, 13, 414-430. DOI: https://doi.org/10.1111/j.1364-3703.2011.00783.x
Dubrovina A S, and Kiselev K V 2019. Exogenous RNAs for Gene Regulation and Plant Resistance. International Journal of Molecular Sciences, 20(9): 2282. DOI: https://doi.org/10.3390/ijms20092282
Gong L, Chen Y, Hu Z, and Hu M 2013. Testing insecticidal activityofnovel chemically synthesized siRNAagainst Plutella xylostella under laboratory and field conditions. PLOS One, 8(5). DOI: https://doi.org/10.1371/journal.pone.0062990
Goss EM, Tabima JF, Cooke DE, Restrepo S, Fry WE, Forbes GA, Fieland VJ, Cardenas M, Grünwald NJ 2014).The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes. Proceedings of the National DOI: https://doi.org/10.1073/pnas.1401884111
Academy of Sciences U S A, 111(24):8791-6. doi: 10.1073/ pnas.1401884111.
Guo Q, Liu Q, Smith N A, Liang G, and Wang M B 2016. RNA Silencing in Plants: Mechanisms, Technologies and Applications in Horticultural Crops. Current Genomics, 17(6): 476-489. DOI: https://doi.org/10.2174/1389202917666160520103117
Islam M T and Sherif S M 2020. RNAi-Based Biofungicides as a Promising Next-Generation Strategy for Controlling Devastating Gray Mold Diseases. International Journal of Molecular Sciences, 21(6): 2072. DOI: https://doi.org/10.3390/ijms21062072
Kalyandurg P B, Sundararajan P, Dubey M, Ghadamgahi F, Zahid M A, Whisson S C, Vetukuri R R 2021. Spray-induced gene silencing as a potential tool to control potato late blight d is e a s e . b i o R x i v . 0 2 . 0 7 . 4 3 0 1 4 0 ; d o i : https://doi.org/10.1101/2021. 02.07.430140.
Knip M, Constantin M E, and Thordal-Christensen H 2014.Trans-kingdom cross-talk: Small RNAs on the move. PLoS Genet. 10, e1004602. DOI: https://doi.org/10.1371/journal.pgen.1004602
Koch A, Biedenkopf D, Furch A, Weber L, Rossbach O, Abdellatef E, Linicus L, Johannsmeier J, JelonekL, Goesmann A, Cardoza V, McMillan J, Mentzel T, Kogel K H 2016. An RNAi-Based control of Fusarium graminearum infections through spraying of long dsRNAs involves a plant passage and is controlled by the fungal silencing machinery. PLOS Pathogens, 12(10). DOI: https://doi.org/10.1371/journal.ppat.1005901
Kuo Y W and Falk B W 2020. RNA interference approaches for plant disease control. BioTechniques 69: 469-477 doi 10.2144/ btn-2020-0098. DOI: https://doi.org/10.2144/btn-2020-0098
Li H, Guan R, Guo H and Miao X 2015. New insights into an RNAi approach for plant defence against piercing-sucking and stem-borer insect pests. Plant Cell and Environment, 38(11): 2277-2285. DOI: https://doi.org/10.1111/pce.12546
McLoughlin A G, Wytinck N, Walker P L, Girard I J, Rashid K Y, Kievit T D, Fernando, W G D, Whyard S and Belmonte M F 2018. Identification and application of exogenous dsRNA confers plant protection against Sclerotinia sclerotiorum and Botrytis cinerea. Science Reports, 8: 7320. DOI: https://doi.org/10.1038/s41598-018-25434-4
Meister G and Tuschl T 2004. Mechanisms of gene silencing by double-stranded RNA. Nature, 431(7006): 343-349. DOI: https://doi.org/10.1038/nature02873
Mitter N, Worrall E A, Robinson K E, Li P, Jain R G, Taochy C, Fletcher S J, Carroll B J, Lu G Q, Xu Z P 2017. Clay nanosheets for topical delivery of RNAi for sustained protection against plant viruses. Nature Plants, 3: 16207. DOI: https://doi.org/10.1038/nplants.2016.207
Morozov S Y, Solovyev A G, Kalinina N O, and Taliansky M E 2019. Double-Stranded RNAs in Plant Protection Against Pathogenic Organisms and Viruses in Agriculture. Acta Naturae, 11(4): 13-21. DOI: https://doi.org/10.32607/20758251-2019-11-4-13-21
Nerva L, Sandrini M, Gambino G, and Chitarra W 2020. Double-StrandedRNAs (dsRNAs) as a sustainable tool against gray mold (Botrytis cinerea) in grapevine: Effectiveness of different application methods in an open-air environment. Biomolecules, 10(2): 200. DOI: https://doi.org/10.3390/biom10020200
Numata K, Ohtani M, Yoshiz T, Demura T and Kodama Y 2014. Local gene silencing in plants via synthetic dsRNA and carrier peptide. Plant Biotechnology Journal, 12: 1027-1034. DOI: https://doi.org/10.1111/pbi.12208
Sang H and Kim J I 2020. Advanced strategies to control plant pathogenic fungi by host-induced gene silencing (HIGS) and spray-induced gene silencing (SIGS). Plant Biotechnology Reports, 14: 1-8. DOI: https://doi.org/10.1007/s11816-019-00588-3
Siddappa S, Sharma S, Bairwa A, Tomar M, Kumar R, Bhardwaj V, Jeevalatha A, Bakade R, Salaria N, Thakur K, Singh B P and Chakrabarti S K 2021. Spraying of dsRNA Molecules Derived from Phytophthora Infestans, as a Plant Protection Strategies for the Management ofPotato Late Blight. Preprints. doi:10.20944/preprints202102.0280.v1. DOI: https://doi.org/10.20944/preprints202102.0280.v1
Song X S, Gu K X, Duan X X, Xiao X M, Hou Y P, Duan Y B, Wang J X, and Zhou M G 2018. A myosin5 dsRNA that reduces the fungicide resistance and pathogenicity ofFusarium asiaticum. Pesticide Biochemistry and Physiology, 150: 1-9. DOI: https://doi.org/10.1016/j.pestbp.2018.07.004
Tenllado F and Díaz-Ruíz J R 2001. Double-stranded RNA-mediated interference with plant virus infection. Journal of Virology, 75(24): 12288-12297. DOI: https://doi.org/10.1128/JVI.75.24.12288-12297.2001
Qi T, Guo J, Peng H, Liu P, Kang Z, and Guo J 2019. Host-Induced Gene Silencing: A Powerful Strategy to Control Diseases of Wheat and Barley. International Journal of Molecular Sciences, 20(1): 206. DOI: https://doi.org/10.3390/ijms20010206
Voloudakis A E, Holeva M C, Sarin L P, Bamford D H, Vargas M, Poranen M M, and Tenllado F 2015. Efficient double-stranded RNA production methods for utilization in plant virus control. Methods in Molecular Biology (Clifton, N.J.), 1236: 255-274. DOI: https://doi.org/10.1007/978-1-4939-1743-3_19
Wang M, Weiberg A, Lin F M, Thomma B P H J, Huang H D and Jin H 2016. Bidirectional cross-kingdom RNAi and fungal uptake of external RNAs confer plant protection. Nature Plants, 2: 16151. DOI: https://doi.org/10.1038/nplants.2016.151
Wang M, and Jin H 2017. Spray-Induced Gene Silencing: a Powerful Innovative Strategy for Crop Protection. Trends in Microbiology, 25(1): 4-6. DOI: https://doi.org/10.1016/j.tim.2016.11.011
Weiberg A, Wang M, Lin F M, Zhao H, Zhang Z, Kaloshian I, Huang H D, and Jin H 2013. Fungal small RNAs suppress plant immunity by hijacking host RNA interference pathways. Science, 342(6154): 118-123. DOI: https://doi.org/10.1126/science.1239705
Wytinck N, Manchur C L, Li V H, Whyard S, and Belmonte M F 2020. dsRNA Uptake in Plant Pests and pathogens: insights into RNAi-Based insect and fungal control technology. Plants (Basel, Switzerland), 9(12): 1780. DOI: https://doi.org/10.3390/plants9121780
Zeng J, Gupta V K, Jiang Y, Yang B, Liang Gong L and Zhu H. 2019. Cross-kingdom small RNAs among animals, plants and microbes. Cells, 8: 371 doi:10.3390/cells8040371. DOI: https://doi.org/10.3390/cells8040371