AVR-AgDb: A Plant-Based Antiviral Repository to Minimize the Detrimental Effects of Frequent Viral Outbreaks and the Next Pandemic
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Keywords:
Database, Virus; Viral diseases; Plant-based; Antiviral compounds; COVID-19; AVR-AgDb.Abstract
There is an imperative need to investigate less toxic antiviral phytomolecules than nucleic acid analogs, enzyme inhibitors, or synthetic molecules as
antiviral therapeutics. Agricultural crops and their secondary metabolites have been well known for their healing and immunity-boosting properties
throughout the globe since human civilization. A recent global pandemic, COVID-19, caused by Severe Acute Respiratory Syndrome Coronavirus 2
(SARS-CoV-2), has become one of the most devastating challenges for humans, compounded by increasing diffusion due to migration, global travel,
and urbanization. Even before this, about >650K annual deaths had been due to seasonal viral flu disease alone. Dramatic mutations in viruses and the
time needed in vaccine development have made the world realize nutrition-immunity intervention as a pragmatic preventive approach for most human
viral diseases. In the telecommunications era, an efficient, user-friendly database for searching antiviral plants and their constituents is a prerequisite.
Such a database will also facilitate post-COVID economic resilience in the agricultural system. It may also accelerate the research and development
of eco-friendly antiviral molecules from natural resources. It further provides classified antiviral molecules with their specific names and structure,
their modes of action, and model organisms studied, along with respective literature references. This information can be accessed or retrieved plant
wise, viral disease-wise and chemical compound class/sub-class-wise using a URL (https://avragdb.abrl.in/). It comprehensively comprehends about
>350 molecules with antiviral properties from >500 plants of medicinal and agricultural importance. The database could be useful for phytotherapy
research and spreading the accountability of plant-based antiviral formulations.
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Fig. 1 A web resource, AVR-AgDb: A plant-based antiviral repository was
created using the three-tier architecture viz. client, middle, and database
tier to contain all the collective and compiled results on plant-based
antiviral molecules, their characteristic features. XAMPP framework was
used to design and deploy the webpage. The website framework was made
using HTML, designing was done by using CSS, and was made dynamic
using JavaScript, while software Apache was used as the web server, the
website was supported by the MySQL database in the backend, and PHP
was used as the server-side language and for database connectivity.
Fig. 2. The cartoon diagram summarizes that medicinal agricultural crops
produce three kinds of phyto-compounds. These are phytonutrients,
nutraceuticals, and phytochemicals. These plants’ derivative antiviral
compounds are used as preventive antiviral measures or utilized post
viral infection. These compounds act directly on the virus life cycle or
boost host immunity in multifarious ways. A centrally developed database
collectively provides user-friendly access to known antiviral molecules,
their mode of action, and other necessary related information with a single
click. Bi-model search option makes it more effortless to find plant-based
antiviral molecules for the sixteen deadliest viruses. The virus and database
figures have been fetched from BioRender (https://biorender.com/)