The complete mitochondrial genome and phylogeny of the green chromide, Etroplus suratensis (Bloch, 1790) from Vembanad Lake, Kerala, south India


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Authors

  • Wilson Sebastian Central Marine Fisheries Research Institute, Post Box No: 1603, Ernakulam North P.O., Kochi, Kerala, India
  • Sandhya Sukumaran Central Marine Fisheries Research Institute, Post Box No: 1603, Ernakulam North P.O., Kochi, Kerala, India
  • Gopalakrishnan A Central Marine Fisheries Research Institute, Post Box No: 1603, Ernakulam North P.O., Kochi, Kerala, India

https://doi.org/10.21077/ijf.2019.66.3.86643-16

Abstract

The green chromide Etroplus suratensis (Bloch, 1790), is a cichlid species which forms an economically valuable food fish and a preferred candidate for brackishwater aquaculture in India. The complete mitogenome of E. suratensis collected from Vembanad Lake, Kerala, India has been characterised in the present study. The entire mitogenome was PCR amplified as contiguous, overlapping segments and sequenced. The assembled mitogenome of E. suratensis is 16456 bp circle, contained the 37 mitochondrial structural genes, two ribosomal RNA genes (12S rRNA and 16S rRNA), 22 transfer RNA (tRNA) genes, 13 protein-coding genes and 1 non-coding control region/D-loop, with the gene order identical to vertebrates. In the phylogenetic analysis, E. suratensis is clustered with other Indo-Sri Lankan taxa. Among cichlids, the groups from South America and Africa are monophyletic in origin. The mitogenomic information generated in this study will be valuable for further studies on evolution, taxonomy, conservation, environmental adaptation and selective breeding of this species having aquaculture, ornamental and evolutionary importance.

Keywords: Cichlids, Complete mitochondrial genome, Etroplus suratensis, Phylogenetic status

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Author Biography

  • Wilson Sebastian, Central Marine Fisheries Research Institute, Post Box No: 1603, Ernakulam North P.O., Kochi, Kerala, India

    Wilson Sebastian is a PhD research scholar at Central Marine Fisheries Research Institute, Kochi, India. He received a master’s degree in Biotechnology from Mahatma Gandhi University, Kerala, India. His current field of work is in fish population genetics and genomics. He is interested in genome organization of marine organisms, understanding the genetic basis of adaptation, Gene–environment interaction and Conservation genetics.

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Submitted

2019-01-31

Published

2019-09-30

Issue

VOL 66, No 3 (2019)

Section

Note

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Copyright (c) 2019 Indian Journal of Fisheries

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The copyright of the articles published in Indian Journal of Fisheries vests with the Indian Council of Agricultural Research, who has the right to enter into any agreement with any organization in India or abroad engaged in reprography, photocopying, storage and dissemination of information contained in these journals. The Council has no objection in using the material, provided the information is being utilized for academic purpose but not for commercial use. Due credit line should be given to the ICAR where information will be utilized.

How to Cite

Sebastian, W., Sukumaran, S., & A, G. (2019). The complete mitochondrial genome and phylogeny of the green chromide, Etroplus suratensis (Bloch, 1790) from Vembanad Lake, Kerala, south India. Indian Journal of Fisheries, 66(3). https://doi.org/10.21077/ijf.2019.66.3.86643-16
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