Genetic diversity in natural watermelon (Citrullus lanatus) populations of Rajasthan
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Keywords:
Crop improvement, Ecotypes, Genetic diversity, Natural population, RAPD, WatermelonAbstract
The present investigation was carried out to estimate the genetic diversity at molecular level using RAPD primers across 23 genotypes of watermelon [ Citrullus lanatus (Thunb.) Mastum and Nakai]. RAPD analysis was conducted using 14 random primers of which eight primers produced 41 bands, 39 being polymorphic, generating 95% polymorphism. Jaccard similarity index based on RAPD revealed 49.6% average similarity with a range of 28% to 86%. The SAHN clustering based on UPGMA algorithms has put genotypes in two groups, one with 5 genotypes and another with 9 genotypes. The 9 genotype were left separately these being most diverse. High within and between group diversity resulted in poor grouping. Moreover clustering did not show any regional pattern. However, some population specific bands suggested regional influence on diversity.
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References
Barker H A, Matthes M, Arnold M G, Edwords J K, Ahman I, Larson S and Karp A.1999. Characterization of genetic diversity and potential biomass willows (Solix spp.) by RAPD and AFLP analysis. Genome 42: 173–83. DOI: https://doi.org/10.1139/g98-105
Besnard G, Baradat P and Berville A. 2001. Genetic relationships in the olive (Olea europaea L.) reflect multilocal selection of cultivars. Theoretical and Applied Genetics 102 (2-3): 251–8. DOI: https://doi.org/10.1007/s001220051642
Chen Y Z and Liu C M. 2001. Identification and analysis of 5 longan varieties by RAPD. China Fruits 4: 28–9.
Chin E and Smith S. 1993. RAPD primers used in analysis of the genome appear to be highly specific. Maize Genetics Cooperation Newsletter 67: 61–2.
Chowdhury A K, Srinives P, Tangpamnak P, Saksoong P and Chatwachirawong P. 2002. Genetic relationship among exotic soybean introductions in Thailand. Consequence for varietal registration. Science Asia 28: 227–39. DOI: https://doi.org/10.2306/scienceasia1513-1874.2002.28.227
Dane F and Liu J. 2007. Diversity and origin of cultivated and citron type watermelon (Citrullus lanatus). Genetic Resources and Crop Evolution 54 (6): 1 255–65. DOI: https://doi.org/10.1007/s10722-006-9107-3
Dhillon N, Ranjana R, Singh K, Eduardo I, Monforte A, Pitrat M and Singh P. 2007. Diversity among landraces of Indian snapmelon (Cucumis melo var. momordica). Genetic Resources and Crop Evolution 54 (6): 1 267–83. DOI: https://doi.org/10.1007/s10722-006-9108-2
Doyle J J and Doyle J L. 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13–5.
Gao Z H, Zhang Z, Sheng B C and Yao Q H. 2001. Preliminary study on RAPD fingerprints of some stone fruits. Journal of Fruit Science 18 (2): 120–1.
Hunter P R and Gaston M A. 1988. Numerical index of the discriminatory ability of typing systems : an application of Simpson’s index of diversity. Journal of Clinical Microbiology 2 465–6.
Jaccard P. 1908. Nouvelles recherché sur la distribution forale. Bull Soc Vaudoise Science Nature 44: 223–70.
Khalil M S, Momtaz O A, Saad O S and Madkour M A. 1998. Molecular characterization among three Egyptian cotton (Gossypium barbadense) varieties. Journal of Union of Arab Biologist 5 (B): 19–32.
Lee S J, Shin J S, Park K W and Hong Y P. 1996. Detection of genetic diversity using RAPD-PCR and sugar analysis in watermelon [Citrullus lanantus (Thunb.) Mansf.] germplasm. Theoretical and Applied Genetics 92 (6): 719–25. DOI: https://doi.org/10.1007/BF00226094
Levi A, Thomas C E, Keinath A P and Wehner T C. 2001. Genetic diversity among watermelon (Citrullus lanatus and Citrullus colocynthis) accessions. Genetic Resources and Crop Evolution 48 (6): 559–66. DOI: https://doi.org/10.1023/A:1013888418442
Levi A and Thomas C E. 2007. DNA markers from different linkage regions of watermelon genome useful in differentiating among closely related watermelon genotypes. Hort. Science 42(2): 210–4. DOI: https://doi.org/10.21273/HORTSCI.42.2.210
Mullis K B and Faloona F A.1987. Specific synthesis of DNA in vitro via a Polymerase catalysed reaction. Methods of Enzymology 55: 335–50. DOI: https://doi.org/10.1016/0076-6879(87)55023-6
Rohlf F J. 1998. NTSYS-pc Numerical taxonomy and multivariate analysis system. version 2.02 f. Exeter Software, Setauket, New York. Acta Genetica Sinica 30: 81–7.
Simpson E H.1949.Measurement of diversity. Nature 163: 688. DOI: https://doi.org/10.1038/163688a0
Swarop V. 2006. Vegetable Science and Technology in India, pp 409–15. Kalyani Publisher, Ludhina.
Williams J G K, Kubelik A R, Livak K J, Rafalski J A and Tingey S V. 1990. DNA polymorphism amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18: 6 531–5. DOI: https://doi.org/10.1093/nar/18.22.6531
Xavier R, de Barros E G, Faleiro F G and Moreira M A. 1997. RAPD – PCR amplification of soybean DNA using pairwise combinations of primers. Brazilian Journal of Genetics 20 (2). DOI: https://doi.org/10.1590/S0100-84551997000200022
Xu Y, Guo J, Zhang H, Gong G K. P and Che Wang B. 2004 Analysis of genetic relationships of watermelon [C. lanatus (Thunb.) Mansfeld] germplasm using RAPD and AFLP. (In) XXVI International Horticultural Congress: Advances in Vegetable Breeding, Acta Horticulturae 637. DOI: https://doi.org/10.17660/ActaHortic.2004.637.33
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