Characterization of rice (Oryza sativa L.) landraces and cultivars using agro morphological traits


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Authors

  • M Jegadeeswaran
  • A Manivannan
  • S Mohan
  • G Pavithradevi
  • A P Salini
  • C R Anandakumar
  • M Maheswaran

Abstract

A set of 152 rice genotypes comprising of landraces, traditional varieties, exotic lines, cultures and released varieties collected from nine different states of India as well as from nine countries were evaluated for 12 agromorphological traits by principal component analysis for determining the pattern of genetic diversity and
relationship among individuals. The largest variation was observed for the trait single plant yield with CV of 39.52% followed by single panicle sterile seed (35.41%) and single panicle fertile seed (29.34%). The trait panicle length exhibited the least variation with the CV of 14.86%. Principal component analysis revealed four significant principal components and accounted for a cumulative variation of 74.90%. The first principal component accounted for 34.97 %, second for 19.56%, third for 10.55% and fourth for 9.81% of total variation. Biplot exhibited convex of the hull which was occupied by the genotypes namely TKM3, ADT 47, CO 39, Nootripathu, Veeradangan, Cult 3000 and T1035 as these genotypes were exhibited highest level of variation.
They can be used as diverse parents in crossing programme. Traits namely culm thickness, panicle length, days to heading, flag leaf length, plant height, width of flag leaf were discriminated the genotypes in higher degree. Cluster anlaysis identified five distinct groups among 152 genotypes which can be utilized for the trait improvement breeding programme.

References

Bhuyan N, Borah BK and Sarma RN 2007. Genetic diversity analysis in traditional lowland rice (Oryza sativa L.) of Assam using RAPD and ISSR markers. Curr.Sci . 93: 967-972

Borkakati RP, Borah P and Deka PC 2000. Genetic divergence in photoperiodinsensitive autumn rice germplasm of Northeast India. In: Khush GS, Brar DS, Hardy B (eds) Advances in Rice Genetics. IRRI, Los Banos, Philippines pp. 74-76

Glaszmann JC, Benyayer P and Arnaud M 1989. Geneticdivergence among rices from Northeast India, Genetic Resources Section, National Institute of Genetics, Mishima, JapanRice Genetics Newsletter pp. 6-63

Hammer Ø, Harper DAT and Ryan PD 2001. PAST: Paleontological statistics software package for education and data analysis. Palaeontol. Electronic

: 1-9

Hamrick JL, Godt MJ 1996. Conservation genetics of endangered plant species. In: Avise JC, Hamrick JL (eds) Conservation Genetics: Case Histories from Nature. Chapman & Hall, New York pp. 281-304

Jegadeeswaran M, Anandakumar CR and Maheswaran M 2014. Principal component analysis of morphological traits related to brown planthopper

(BPH) (Nilaparvata lugens Stål.) resistance in 442 accessions of rice (Oryza sativa L.). Trends in Biosciences 7(16): 2253-2256

Lenord K and Peter RJ 2009. Finding groups in data: An introduction to cluster analysis, third edition, John Wiley & Sons, New York pp. 344

Lisa LA, Elias SM, Rahman MS, Shahid S, Iwasaki T, Hasan AKMM, Kosuge K, Fukami Y and Seraj ZI 2011. Physiology and gene expression of the rice landrace under salt stress. Funct. Plant Biol. 38: 282-292

Nachimuthu VV, Robin S, Sudhakar D, Raveendran M, Rajeswari S and Manonmani S 2014. Evaluation of rice genetic diversity and variability in a population panel by principal component analysis. Indian Journal of Science and Technology 7(10): 1555-1562

Nachimuthu VV, Raveendran M, Sudhakar D, Rajeswari S, Balaji AP, Govinthraj P, Karthika G, Manonmani S, Suji KK and Robin S 2015. Analysis of population structure and genetic diversity in rice germplasm

using SSR markers: an initiative towards association mapping of agronomic traits in Oryza Sativa. DOI: 10.1186/s12284-015-0062-5

Pusadee T, Jamjod S, Chiang YC, Rerkasem B and Schaal BA 2009. Genetic structure and isolation by distance in a landrace of Thai rice. Proc. Nat. Acad. Sci. 106 (33): 13880-13885

Sarma RN and Bahar B 2005. Genetic variation of bora rice (glutinous rice) of Assam as revealed by RAPDs. FAO. IPGRI. Plant Genetic Resources Newsletter 144: 34-38

Singh Y and Singh US 2008. Genetic diversity analysis in aromatic rice germplasm using agro- morphological traits. J. Pl. Genet. Resour. 21(1): 32-37

Vairavan S, Siddiq EA, Arunachalam V and Swaminathan MS 1973. A study on the nature of genetic divergence in rice from Assam and Northeast Himalayas. Theor. Appl. Genet. 43: 213-221

Wang JC, Hu J, Zhang CF and Zhang S 2007. Assessment on evaluating parameters of rice core collections constructed by genotypic values and molecular marker information. Rice Sci. 14(2): 101-110

Zhao WG, Chung JW, Lee GA, Ma KH, Kim HH, Kim KT, Chung IM, Lee JK, Kim NS, Kim SM and Park YJ 2011. Molecular genetic diversity and population structure of a selected core set in garlic and its relatives using novel SSR markers. Plant Breed. 130(1): 46-54

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Submitted

2017-08-05

Published

2017-05-19

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Articles

How to Cite

Jegadeeswaran, M., Manivannan, A., Mohan, S., Pavithradevi, G., Salini, A. P., Anandakumar, C. R., & Maheswaran, M. (2017). Characterization of rice (Oryza sativa L.) landraces and cultivars using agro morphological traits. ORYZA-An International Journal of Rice, 54(1). https://epubs.icar.org.in/index.php/OIJR/article/view/72921