Varietal identification in rice (Oryza sativa) through chemical tests and gel electrophoresis of soluble seed proteins


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Authors

  • P S RAO Seed Research and Technology Centre, Acharya N G Ranga Agricultural University, Hyderabad 500 030
  • M BHARATHI Seed Research and Technology Centre, Acharya N G Ranga Agricultural University, Hyderabad 500 030
  • K BAYYAPU REDDY Seed Research and Technology Centre, Acharya N G Ranga Agricultural University, Hyderabad 500 030
  • K KESHAVULU Seed Research and Technology Centre, Acharya N G Ranga Agricultural University, Hyderabad 500 030
  • L V SUBBA RAO Seed Research and Technology Centre, Acharya N G Ranga Agricultural University, Hyderabad 500 030
  • C N NEERAJA Seed Research and Technology Centre, Acharya N G Ranga Agricultural University, Hyderabad 500 030

https://doi.org/10.56093/ijas.v82i4.16631

Keywords:

Electrophoresis, Protein bands, Relative mobility, Rice, Seed key

Abstract

Variety identification has great significance from seed production, breeding as well as intellectual property rights point of view to ensure quality seed. Forty varieties of rice were identified on the basis of seed colour (phenol, modified phenol and NaOH), seedling response (GA3 and 2, 4-D) to chemical tests and electrophoresis of soluble seed proteins (SDS-PAGE). Though no individual chemical test was able to distinguish all the genotypes, different chemical tests in conjunction were useful in identification of varieties. The SDS-PAGE of seed proteins was able to identify all the 40 genotypes of different origin and can be employed effectively for identification of these rice varieties. Dendrogram of the data indicated the wide diversity of the varieties released from Andhra Pradesh with similarity ranging from 0.36 to 0.98. Based on the response of 40 rice varieties to biochemical techniques and total soluble protein profiles through SDS- PAGE, a comprehensive ‘seed key’ has been developed for rapid varietal identification.

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References

Aliaga-Morell J R, Culianez-Macia F A, Clemente-Marin G and Primo-Yufera E. 1987. Differentiation of rice varieties by electrophoresis of embryo proteins. Theoretical and Applied Genetics 74: 224.

Anonymous. 1994 a. UPOV guidelines for the conduct of test for DUS-Wheat (Triticum aestivum) UPOV, TG/3/11.

Anonymous. 1994 b. UPOV guidelines for the conduct of test for DUS-barley (Hordeum vulgare) Revised document UPOV, TG/ 2/5.

Anonymous. 2007. PPV and FR authority specific DUS test guidelines for twelve notified crops-rice (Oryza sativa L). Plant variety Journal of India 1: 151–69.

Biradar Patil N K, Sangeeta Macha. Motagi B N, Hulihalli U K and Hanchinal. 2008. Identification and grouping of safflower genotypes through chemical tests. Proceedings of 7th International Safflower Conference, WAGGA WAGGA AUSTRALIA.

Chakrabarthy S K and Agrawal R L. 1990. Identification of black gram varieties III. Utilization of seedling growth response to added chemicals. Seed Research 18: 34–9.

Chauhan J S and Nanda J S. 1984. Varietal identification of rice (Oryza sativa L.) by physico-chemical characters of the grain and electrophoretic variants of salt soluble seed proteins. Seed Research 12: 78–9.

Galani S, Naz1 F, Soomro, Jamil I, Zia-ul-hassan A, Azhar and Ashraf A. 2011. Seed storage protein polymorphism in ten elite rice (Oryza sativa L.) genotypes of Sindh. African Journal of Biotechnology 10: (7) 1106–11.

International Seed Testing Association. 1996. International Rules for Seed Testing, Seed Science and Technology 24, Supplement 1–228.

Jaccard P. 1928. Die Statistisch-Floristische Method als Grundlage der Pflanzensoziologie. Abderhalden, Handbuch Biologisch Arbeitsmethod 11: 165–202.

Jaiswal J P and Agrawal R L. 1995. Varietal purity determination in rich modification of the phenol test. Seed Science and Technology 23: 33–42.

Kumar Arun M B, Varier A, Sherry R J, Aruna kumara and Dadlani M. 2005. Characterization of pearlmillet [Pennisetum glaucum (L.) R.Br.] genotypes by seedling anthocyanin pigmentation and seed characters. Seed Science and Technology 33: 215–26.

Kumar Ashwani, Chowdhory R K, Kapoor R L and Dahiya O S 1995. Identification of pearl millet hybrids and their parental lines using seed and seedling characters, chemical tests and gel electrophoresis. Seed Science and Technology 23: 21–32.

Laemmli U K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nautre 227: 680–5. Landizinsky G and Hymowitz T 1979 Seed protein electrophoresis in taxonomic and evolutionary studies. Theoretical and Applied Genetics 54: 145–51.

Mackill D J. 2006. Breeding for resistance to abiotic stresses in rice: the value of quantitative trait loci. (in) Plant Breeding: The Arnel R Hallauer International Symposium. Blackwell Pub. Ames IA 201–212. Lamkey KR Lee M (Eds).

Nethra N, Rajendra Prasad S, Viswanath K, Dhanraj K N and Rame Gowda. 2007. Identification of rice hybrids and their parental lines based on seed, seedling characters, chemical tests and gel electrophoresis of total soluble seed proteins. Seed Science and Technology 35: 176–86.

Patra and Chawla 2010 Biochemical and RAPD molecular markers for establishing distinctiveness of basmati rice (Oryza sativa L.) varieties as additional descriptors for plant variety protection. Indian Journal of Biotechnology 9: 371–7.

Protection of Plant Varieties and Farmers’ Rights Act. 2001. http://www.plantauthortiy.gov.in

Pragya, Bhat K V, Misra R L and Ranjan J K. 2010. Analysis of diversity and relationships among Gladiolus cultivars using morphological and RAPD markers. Indian Journal of Agricultural Sciences 80: (9) 766–72.

Rohlf F J. 1998. NTSYS-pc: Numerical Taxanomy and Multivariate Analysis system. Version 2.0. Applied Biostatistics Inc. Department of Ecology and Evolution, State University of New York, Sony Brook, NY.

Siddiq E A. 2000. Bridging the rice yield gap in India. Bridging the Rice Yield Gap in India in the Asia-Pacific Region 2000. Minas

K. Papademetriou, Frank J. Dent Edward M. Herath (Eds). http://www.fao.org/corp/

Ullah I, Ahmad Khan I, Ahmad H, Sul-Gafoor S Gul, Muhammad I and Ilyas M. 2010. Seed storage protein profile of rice varieties commonly grown in Pakistan. Asian Journal of Agricultural Sciences 2 (4) 120–3.

Varier A, Dadlani M and Sharma S P. 1995. Phenol test and electrphoresis of seed esterases for testing genetic purity in seed lots of pearl millet. Indian Journal of Agricultural Sciences 65: 789–92.

Wouters T C A and Booy G. 2000. Stability of esterases and total proteins during seed storage of perennial ryegrass (Lolium perenne L.) and their use for cultivar discrimination. Euphytica 111: 161–8.

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Submitted

2012-04-09

Published

2012-04-10

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Articles

How to Cite

RAO, P. S., BHARATHI, M., REDDY, K. B., KESHAVULU, K., SUBBA RAO, L. V., & NEERAJA, C. N. (2012). Varietal identification in rice (Oryza sativa) through chemical tests and gel electrophoresis of soluble seed proteins. The Indian Journal of Agricultural Sciences, 82(4), 304–11. https://doi.org/10.56093/ijas.v82i4.16631
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