Characterization of bolting behaviour in garlic (Allium sativum) using SNP


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Authors

  • YADWINDER KAUR M Sc Student, Punjab Agricultural University, Ludhiana, Punjab 141 004, India
  • R K DHALL Associate Professor, Punjab Agricultural University, Ludhiana, Punjab 141 004, India
  • PRITI SHARMA Assistant Professor, School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, Punjab.

https://doi.org/10.56093/ijas.v90i1.98556

Keywords:

Garlic, Incomplete bolters, Non-bolters, SNP

Abstract

The present research was conducted to evaluate the bolting (incomplete bolters and non-bolters) behaviour in garlic (Allium sativum L.) accessions collected from different geographical areas. A total of 96 genotypes collected from different sources were used for genotype sequencing to identify SNP but only 73 genotypes among them showed good amplification. A primer (AsLFY) was designed by using reference of already designed gene specific primer (gALFY-2) by Rotem et al. (2007). After amplification, sequencing of these 73 genotypes was done; SNP (CCGTCG) was at 301 bp from initiation codon, i.e. G for non-bolters genotypes and A for incomplete bolter genotypes. Thus, the identified SNP would help in detecting incomplete bolter and non-bolter genotypes at seedling stage which can be useful for garlic breeding programmes.

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References

Al-Zahim M A, Ford-Lloyd B V and Newbury H J. 1999. Detection of somaclonal variation in garlic (Allium sativum L.) using RAPD and cytological analysis. Plant Cell Reports 18: 473–7. DOI: https://doi.org/10.1007/s002990050606

Cunha C P, Hoogerheide E S, Zucchi M I, Monteiro M and Pinheiro J B. 2012. New microsatellite markers for garlic, Allium sativum (Alliaceae). American Journal of Botany 99: 17–19. DOI: https://doi.org/10.3732/ajb.1100278

Ipek M, Ipek A, Alquist S G and Simon P W. 2005. Demonstration of linkage and development of the first low-density genetic map of garlic, based on AFLP markers. Theoretical and Applied Genetics 110: 228–36. DOI: https://doi.org/10.1007/s00122-004-1815-5

Ipek M, Ipek A, Cansev A, Seniz V and Simon P W. 2012. Development of EST based SSR markers for the garlic genome. Acta Horticulturae 969: 81–83. DOI: https://doi.org/10.17660/ActaHortic.2012.969.7

Kamenetsky R. 2007. Garlic: Botany and horticulture. Horticultural Reviews 33: 123–71. DOI: https://doi.org/10.1002/9780470168011.ch2

Kamenetsky R and Rabinowitch D H. 2001. Floral development in bolting garlic. Sexual Plant Reproduction 13: 235–41. DOI: https://doi.org/10.1007/s004970000061

Khar A. 2012. Cross amplification of onion derived microsatellites and mining of garlic EST database for assessment of genetic diversity in garlic. Acta Horticulturae 969: 289–95. DOI: https://doi.org/10.17660/ActaHortic.2012.969.37

Ma K H, Kwag J G, Zhao W, Dixit A, Lee G A, Kim H H, Chung I M, Kim N S, Lee J S, Ji J J, Kim T S and Park Y J. 2009. Isolation and characteristics of eight novel polymorphic microsatellite loci from the genome of garlic (Allium sativum L.). Scientia Horticulturae 122: 355–61. DOI: https://doi.org/10.1016/j.scienta.2009.06.010

Rotem N, Shemesh M E, Peretz Y, Akad F, Edelbaum O, Rabinowitch H D, Sela I and Kamenetsky R. 2007. Reproductive development and phenotypic differences in garlic are associated with expression and splicing of LEAFY homologue gaLFY. Journal of Experimental Botany 58: 1133–41. DOI: https://doi.org/10.1093/jxb/erl272

Saghai-Maroof M A, Soliman K M, Jorgensen R A and Allard R W. 1984. Ribosomal DNA spacer length polymorphism in barley: Mendelian inheritance, chromosomal location and population dynamics. Proceedings of the National Academy of Sciences of the United States of America 81: 8014–19. DOI: https://doi.org/10.1073/pnas.81.24.8014

Saiki R K, Gelfand D H, Stoffel S, Scharf S J, Higuchi R, Horn G T, Mullis K B and Erlich H A. 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA Polymerase. Science 239: 487–91. DOI: https://doi.org/10.1126/science.239.4839.487

Song Y S, Suwabe K, Wako T, Ohara T, Nunome T and Kojima A. 2004. Development of microsatellite markers in bunching onion (Allium fistulosum L.). Breeding Science 54: 361–5. DOI: https://doi.org/10.1270/jsbbs.54.361

Takagi H. 1990. Garlic Allium sativum L. Onions and Allied Crops, Vol. III, pp. 109-146. Rabinowitch H D, Brewster J L (Eds). CRC Press, Boca Raton, FL. DOI: https://doi.org/10.1201/9780429355752-6

Zewdie Y, Havey M J, Prince J P and Jenderek M M. 2005. The first genetic linkages among expressed regions of the garlic genome. Journal of the American Society for Horticultural Science 130: 569–74. DOI: https://doi.org/10.21273/JASHS.130.4.569

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Submitted

2020-02-27

Published

2020-03-02

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How to Cite

KAUR, Y., DHALL, R. K., & SHARMA, P. (2020). Characterization of bolting behaviour in garlic (Allium sativum) using SNP. The Indian Journal of Agricultural Sciences, 90(1), 112-117. https://doi.org/10.56093/ijas.v90i1.98556
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