Genetic Diversity and Stability of Rice Genotypes under Semi-Deep Water (SDW) Ecology in Coastal Sundarbans
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Keywords:
Biplot analysis, Coastal rice ecologies, Diversity analysis, GGE, Semi-deep rice, Stability analysisAbstract
Semi-deep ecology for rice cultivation comprised of waterlogged situation (50-100 cm) for >2 months in field during vegetative and reproductive phases. Coastal low-lying areas are affected with high erratic rainfall and are affected by such conditions. The present study was carried out to find stable and high performing genotypes for varietal release pipeline as well as for finding suitable parents for generating better adapted rice germplasms. Based on seven consecutive years of phenotypic evaluation for days to 50% flowering, plant height, number of tillers per hill and number of panicles per plant, grain yield, straw yield, biomass and harvest index (HI), stable and high performing genotypes were identified. Manas Swarobor, Swarna-sub1, Purnendu, and Tilak Kesari are the underperforming genotypes, whereas Geetanjali and Najani have been the top achievers over the years. The yield of all 25 genotypes in each of the seven seasons was analyzed using a genotype and genotype-environment (GGE) biplot. 44.06% and 18.91% of the phenotypic variability (a total of 62.97%) could be explained by the two primary principal components. The seven environments were divided into two clusters: Cluster-1 (2015 and 2016), Cluster- 2 (2020, 2017, 2021, 2018), and one (2019) at a different node. In most situations, Geetanjali, CSRC(D)12- 8 -12, and CSRC(D)13 -16 -19 were found to perform better. In 2015 and 2016, CSRC(D)7- 5- 4 performed better. Grain yield in the current study was a clear indication of how sowing date and regional characteristics affect varietal performance. In breeding programs, varieties like Geetanjali can be excellent parents and are best suited for all seasons. It is possible to push advanced breeding lines like CSRC(D)13 -16 -19, CSRC(D)12- 8 -12, and CSRC(D)7- 5 - 4 to the varietal evaluation pipeline (AICRIP) for release.
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Ahmed, M.S., Majeed, A., Attia, K.A., Javaid, R.A., Siddique, F., Farooq, M.S., Uzair, M., Yang, S.H., and Abushady, A.M. (2024). Country-wide, multilocation trials of Green Super Rice lines for yield performance and stability analysis using genetic and stability parameters. Scientific Reports 14(1): 9416.
Barik, J., Kumar, V., Lenka, S.K., & Panda, D. (2019). Genetic potentiality of lowland indigenous indica rice (Oryza sativa L.) landraces to anaerobic germination potential. Plant Physiology Reports 24(2): 249-261.
Bhambure, A.B., and Kerkar, S. (2016). Traditionally cultivated rice varieties in coastal saline soils of India. Journal of Arts Science and Humanity 2(1): 65-75.
Bhowmick, M.K., Srivastava, A.K., Singh, S., Dhara, M.C., Aich, S.S., Patra, S.R., and Ismail, A.M. (2020). Realizing the potential of coastal flood prone areas for rice production in West : prospects and challenges. In: New Frontiers in Stress Management for Durable Agriculture, A. Rakshit, H., Singh, A., Singh, U., Singh, L. Fraceto, (eds.), Springer, Singapore. pp 543-577.
Chamara, B.S., Marambe, B., Kumar, V., Ismail, A.M., Septiningsih, E.M., and Chauhan, B.S. (2018). Optimizing sowing and flooding depth for anaerobic germination-tolerant genotypes to enhance crop establishment, early growth, and weed management in dry-seeded rice (Oryza sativa L.). Frontiers in Plant Science 9:1654.
Chattopadhyay, K., Reddy, J.N., Pradhan, S.K., Patnaik, S.S.C., Marndi, B.C., Swain, P., Nayak, A.K., Anandan, A., Chakraborty, K., Sarkar, R.K., Bose, L.K., Katara, J.L., Parameswaran, C., Mukherjee, A.K., Mohapatra, S.D., Poonam, A., and Korada, R.R. (2018). Genetic improvement of Rice for multiple stress tolerance in unfavorable rainfed ecology. In: Rice Research for Enhancing Productivity, Profitability, and Climate Resilience, H. Pathak, A.K. Nayak, M. Jena, O.N. Singh, P. Samal, and S.G. Sharma (eds.), ICAR-National Rice Research Institute, Cuttack, Odisha, India. pp 122-137.
Das, R., Borbora, T.K., Sarma, M.K., and Sarma, N.K. (2005). Genotypic variability for grain yield and flood tolerance in semi deep water rice (Oryza sativa L.) of Assam. Oryza 42(4):313-314.
de Mendiburu, F., and de Mendiburu, M.F. (2019). Package ‘agricolae’. R Package, version 1(3):1143-1149.
Deb, D. (2021). Rice cultures of Bengal. Gastronomica: The Journal of Food and Culture 21(3):91-101.
Debsharma, S.K., Rahman, M.A., Khatun, M., Disha, R.F., Jahan, N., Quddus, M.R., Khatun, H., Dipti, S.S., Ibrahim, M., Iftekharuddaula, K.M., and Kabir, M.S. (2024). Developing climate resilient rice varieties (BRRI dhan 97 and BRRI dhan 99) suitable for salt-stress environments in Bangladesh. Plos one 19(1): e0294573.
Devasena, N. (2025). Stability analysis in rice (Oryza sativa L.) through AMMI and GGE biplots. Electronic Journal of Plant Breeding 16(2):187.
Gao, H., Dou, Z., Chen, L., Lu, Y., Sun, D., Xu, Q., Sun, R., and Chen, X. (2022). Effects of semi deep water irrigation on hybrid indica rice lodging resistance. Frontiers in Plant Science 13:1038129.
Harrell Jr, F.E., and Harrell Jr, M.F.E. (2019). Package ‘hmisc’. CRAN 2018, 2019, 235-236.Hussain, S.H., Behera, P.P.B., Choudhury, M.R., and Sarma, R.N. (2023). Morphological characterisation of rice accessions of semi deep water ecology. Indian Journal of Traditional Knowledge 22(1): 7-16.
Kumar, A., Kharbuli, D., Das, S.P., Touthang, L., WS, P., Verma, V.K., Kaur, S., Kumar, R., Sarika, K., Umakanta, N., and Mishra, V.K. (2025). Elucidating genetic diversity and population structure in rice germplasm and identification of high yielding stable genotypes using MGIDI and GGE biplot analysis. Crop Science 65(5): e70161.
Lee, S.Y., Lee, H.S., Lee, C.M., Ha, S.K., Park, H.M., Lee, S.M., Kwon, Y., Jeung, J.U., and Mo, Y. (2023). Multi-environment trials and stability analysis for yield-related traits of commercial rice cultivars. Agriculture 13(2):256.
Lokeshkumar, B.M., Snehi, S., Krishanu, Kumar, S., Ravikiran, K.T., Kumar, R., Choudhary, M., Kota, S., Kumar, A., Mann, A., Sanwal, S.K., and Prakash, N.R. (2025). Breeding Strategies for Improved Multistress-Resilient Crops. In: Cutting Edge Technologies for Developing Future Crop Plants, A. Mann, N. Kumar, A. Kumar, P. Chandra, S. K. Sanwal and P. Sheoran (eds.), Springer Nature, Singapore. pp 125-154
Maechler, M., Rousseeuw, P., Struyf, A., Hubert, M., Hornik, K., Studer, M., Roudier, P., Gonzalez, J., Kozlowski, K., Schubert, E., and Murphy, K. (2013). cluster: Cluster analysis basics and extensions (R package version 1.14.4). R Foundation for Statistical Computing.
Maiti, R., Rodríguez, H.G., Kumari, C.A., Sarkar, N.C., Begum, S., and Rajkumar, D. (2020). Advances in Rice Science: Botany, Production, and Crop Improvement. Apple Academic Press, Burlington, Canada.
Oladosu, Y., Rafii, M.Y., Magaji, U., Abdullah, N., Miah, G., Chukwu, S.C., Hussin, G., Ramli, A., and Kareem, I. (2018). Genotypic and phenotypic relationship among yield components in rice under tropical conditions. BioMed Research International 2018(1): 8936767.
Olivoto, T., and Lúcio, A.D.C. (2020). metan: An R package for multi-environment trial analysis. Methods in Ecology and Evolution 11(6):783-789.
Pradhan, S.K., Chakraborti, M., Chakraborty, K., Behera, L., Meher, J., Subudhi, H.N., Mishra, S. K., Pandit, E., and Reddy, J.N. (2018). Genetic improvement of rainfed shallow lowland rice for higher yield and climate resilience. In: Rice Research for Enhancing Productivity, Profitability, and Climate Resilience, H. Pathak, A.K. Nayak, M. Jena, O.N. Singh, P. Samal, and S.G. Sharma (eds.), ICAR-National Rice Research Institute, Cuttack, Odisha, India. pp 122-137.
Prakash, N.R., Lokeshkumar, B.M., Rathor, S., Warriach, A.S., Yadav, S., Vinaykumar, N.M., Krishnamurthy, S.L., and Sharma, P.C. (2024). Mechanisms of saline and submergence tolerance in rice for coastal ecology. In: Genetic Improvement of Rice for Salt Tolerance, R.K. Singh, M. Prakash, R.K. Gautam, S.L. Krishnamurthy and S. Thirumeni (eds.), Springer Nature Singapore. pp. 231-256.
Shalahuddin, A.K.M., Masuduzzaman, A.S.M., Ahmed, M.E., Aditya, T.L., and Kabir, M.S. (2019). Development of high yielding deep water rice variety BRRI dhan91 for semi deep flooded ecosystem of Bangladesh. Bangladesh Rice Journal 23(1): 57-63.
Sitaresmi, T., Suwarno, W.B., Gunarsih, C., Nugraha, Y., Sasmita, P., and Daradjat, A.A. (2019). Comprehensive stability analysis of rice genotypes through multi-location yield trials using PBSTATGE. SABRAO Journal of Breeding & Genetics 51(4): 355.
Snehi, S., Bhutia, R.N., and Prakash, N.R. (2022). Breeding rice cultivars suitable for coastal regions of India. Food and Scientific Reports 3(4): 54-58.
Snehi, S., Kiran, K.R., Rathi, S., Upadhyay, S., Kota, S., Sanwal, S.K., Lokeshkumar, B.M., Arun, B., Prakash, N.R., & Singh, P.K. (2025). Discerning genes to deliver varieties: Enhancing vegetative and reproductive-stage flooding tolerance in rice. Rice Science 32(2):160-176.
Tabien, R.E., Samonte, S.O.P., and Tiongco, E.R. (2009). Relationship of milled grain percentages and flowering-related traits in rice. Journal of Cereal Science 49(1): 122-127.
Thennarasu, K. (1995). On certain non-parametric procedures for studying genotype-environment interactions and yield stability. Unpublished Ph.D. Thesis, PG School, ICAR-IARI, New Delhi, India.
Verma, O.P., & Srivastava, H.K. (2004). Genetic component and combining ability analyses in relation to heterosis for yield and associated traits using three diverse rice-growing ecosystems. Field Crops Research 88(2-3): 91-102.
Wei, T., Simko, V., Levy, M., Xie, Y., Jin, Y., & Zemla, J. (2017). Package ‘corrplot’. Statistician 56(316): e24.
Yadav, S.K., Suresh, B.G., Pandey, P., & Kumar, B. (2010). Assessment of genetic variability, correlation and path association in rice (Oryza sativa L.). Journal of bio-science 18: 1-8.
Zewdu, Z., Dessie, A., Worede, F., Atinaf, M., Berie, A., Tahir, Z., Kinfe, H., and Bitew, M. (2020). Agronomic performance evaluation and yield stability analysis of upland rice (Oryza sativa L.) varieties using AMMI and GGE biplot. Plant 8(4): 87-92
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