Assessment of Endophytic Population and Diversity in Different Plants Growing in Saline Soils


Abstract views: 51 / PDF downloads: 63

Authors

  • Priyanka Chandra ICAR-Central Soil Salinity Research Institute, Karnal-132001, Haryana, India
  • Pooja Dhuli ICAR-Central Soil Salinity Research Institute, Karnal-132001, Haryana, India
  • Awtar Singh ICAR-Central Soil Salinity Research Institute, Karnal-132001, Haryana, India
  • Madhu Choudhary ICAR-Central Soil Salinity Research Institute (CSSRI), Karnal, India
  • Kailash Prajapat ICAR-Central Soil Salinity Research Institute (CSSRI), Karnal, India
  • AK Rai ICAR-Central Soil Salinity Research Institute (CSSRI), Karnal, India
  • RK Yadav ICAR-Central Soil Salinity Research Institute (CSSRI), Karnal, India

Keywords:

Endophytes, Fungi, Bacteria, Salinity, Plant roots

Abstract

Endophytes including bacteria and fungi are associated with plants in various forms and are known to colonized inside the plant tissues and provide beneficial functions including plant tolerance under abiotic stress conditions. Hence, the present study was planned to assess the endophytic population in roots of plants growing in saline soils (ECe ~ 2-10 dS m-1). Results demonstrated presence of bacterial and fungal endophytic population inside the roots of plants which ranged from 0.17 to 3.7 × 102 CFU and 0.16 to 3.36 × 102 CFU, respectively. Fungal endophytes positively correlated with ECe (r2=0.77) and pH2 (r2=0.98) of the soils, similarly endophytic bacteria also positively correlated with ECe (r2=0.5) and pH2 (r2=0.79). Diversity indices positively related with soil electrical conductivity while opposite was the case for soil pH. The dendogram demonstrated the relationship among the plants to harbor endophytes in their roots. The first cluster comprised of Chenopodium murale (Sr1), Launaea nudicaulis (Sr2), and Tritium aestivum (Sr4). The second group constituted two crops namely Spergulla arvensis (Sr3) and Brassica jauncea (Sr4). While the third cluster included only Phalaris minor (Sr5). The results of cluster analysis indicates the closeness and similarities of the two different crops on basis of their root properties. The present study provides an insight to the presence of microbial endophytes inside roots of plants growing in saline areas which can be further screened for their plant growth-promoting potential.

Downloads

Download data is not yet available.

References

Abedinzadeh M, Etesami H and Alikhani HA (2019) Characterization of rhizosphere and endophytic bacteria from roots of maize (Zea mays L.) plant irrigated with wastewater with biotechnological potential in agriculture. Biotechnology Reports 20: e00305.

Afzal I, Shinwari ZK, Sikandar S and Shahzad S (2019) Plant beneficial endophytic bacteria: Mechanisms, diversity, host range and genetic determinants. Microbiological Research 221: 36-49.

Brader G, Compant S, Mitter B, Trognitz F and Sessitsch A (2014). Metabolic potential of endophytic bacteria. Current Opinion in Biotechnology 27: 30-37.

Bui EN (2013) Soil salinity: A neglected factor in plant ecology and biogeography. Journal of Arid Environments 92: 14-25.

Chandra P, Dhuli P and Verma (2020). Culturable microbial diversity in the rhizosphere of different biotypes under variable salinity. Tropical Ecology 61: 291-300.

Chandra P, Singh A, Choudhary M and Yadav RK (2021) Role of plant growth promoting rhizobacteria in mitigating salt stress: a review. In: Mishra BB, Nayak SK and Pahari A (eds) Agriculturally Important Microorganisms: Mechanisms and Applications for Sustainable Agriculture. New India Publishing Agency, India, pp 65–90.

Dagar JC, Yadav RK, Singh A and Singh NT (2019) Historical perspectives and dynamics of nature, extent, classification and management of salt-affected soils and waters. In: Dagar JC, Yadav RK and Sharma P (eds) Research Developments in Saline Agriculture. Springer,

Singapore, pp 3-52. https://doi.org/10.1007/978-981- 13-5832-6_1

FAO (2021) Salt affected soils are a global issue. Intergovernmental Technical Panel on Soils (ITPS) Soil Letters #3. Accessed on 22 December, 2021.

Gouda S, Das G, Sen SK, Shin HS and Patra J (2016) Endophytes: a treasure house of bioactive compounds of medicinal importance. Frontiers in Microbiology 7: 01538.

Hardoim PR, van Overbeek LS, Berg G, Pirttila AM, Compant S, Campisano A and Sessitsch A (2015). The hidden world within plants: ecological and evolutionary considerations for defining functioning of microbial endophytes. Microbiology and Molecular Biology Reviews 79(3): 293-320.

Jackson ML (1973) Methods of Chemical Analysis. Prentice Hall of India (Pvt.) Ltd., New Delhi.

Jhuma TA, Rafeya J, Sultana S, Rahman MT and Karim MM (2021). isolation of endophytic salt-tolerant plant growth-promoting rhizobacteria from Oryza sativa and evaluation of their plant growth-promoting traits under salinity stress condition. Frontiers in Sustainable Food Systems 5: 687531.

Kaushik A and Sethi V (2005) Salinity effects on nitrifying and free diazotrophic bacterial populations in the rhizosphere of rice. Bulletin of the National Institute of Ecology 15: 139-144.

Kawasaki A, Donn S, Ryan PR, Mathesius U, Devilla R, Jones A and Watt M (2016) Microbiome and exudates of the root and rhizosphere of Brachypodium distachyon, a model for wheat. PLoS ONE 11(10): e0164533.

Kumar A and Verma JP (2018) Does plant—Microbe interaction confer stress tolerance in plants: A review?. Microbiological Research 207: 41-52.

Kumar R, Singh A, Bhardwaj AK, Kumar A, Yadav RK and Sharma PC (2022) Reclamation of salt-affected soils in India: Progress, emerging challenges, and future strategies. Land Degradation and Development. 1-12. https://doi.org/10.1002/ldr.4320

Kumar A and Verma JP (2018) Does plant—Microbe interaction confer stress tolerance in plants: A review?. Microbiological Research 207: 41–52.

Larran S, Simon MR, Moreno MV, Siurana MPS and Perello A (2016) Endophytes from wheat as biocontrol agents against tan spot disease. Biological Control 92: 17-23.

Mahanta D, Bhattacharyya R, Mishra PK, Gopinath KA, Channakeshavaih C, Krishnan J, Raja A, Tuti MD, Varghese E, Pandey BM, Bisht JK and Bhatt JC (2017). Influence of a 6-year organic and inorganic fertilization on the diversity of the soil culturable microorganisms in the Indian mid-Himalayas. Applied Soil Ecology 120: 229-238.

Minhas PS, Bali A, Bhardwaj AK, Singh A and Yadav RK (2021) Structural stability and hydraulic characteristics of soils irrigated for two decades with waters having residual alkalinity and its neutralization with gypsum and sulfuric acid. Agricultural Water Management 244: 106609. https://doi.org/10.1016/j.agwat.2020.106609

Nair DN and Padmavathy S (2014) Impact of endophytic microorganisms on plants, environment and humans. The Scientific World Journal 2014: 1–11. https://doi. org/ 10.1155/2014/250693

Pillay VK and Nowak J (1997) Inoculum density, temperature, and genotype effects on in vitro growth promotion and epiphytic and endophytic colonization of tomato (Lycopersicon esculentum L.) seedlings inoculated with a pseudomonad bacterium. Canadian journal of Microbiology 43(4): 354-361.

Rai AK, Johri SN, Kaur H, Basak N and Sundha P (2020) Salinity and Sodicity Influence Mutualistic Association of Beneficial Microorganism in Arid Soils. Journal of Soil Salinity and Water Quality 12(1): 15-21.

USSL (1954) Diagnosis and Improvement of Saline and Alkali Soils. USDA Handbook No. 60 Washington DC, USA.78: pp 154.

Shannon CE and Weaver W (1963) The Mathematical Theory of Communication. University of Illinois Press, Urbana.

Sharma PC, Kumar A and Mann A (2021) Physiology of salt tolerance in crops. In: Minhas PS, Yadav RK and Sharma PC (eds) Managing Salt-affected Soils for Sustainable Agriculture. ICAR, New Delhi, pp 199-226.

Simpson EH (1949) Measurement of diversity. Nature

(4148): 688.

Singh A, Kumar A, Yadav RK, Minhas PS and Saini U (2022) Long–term effect of alkali and partially neutralized irrigation water on soil quality. Journal of Soil Science & Plant Nutrition. https://doi.org/10.1007/s42729-021- 00728-1

Suchiang BR, Nonghuloo IM, Kharbhih S, Singh P, Tiwari R, Adhikari D, Upadhaya K, Ramanujam P and Barik SK (2020) Tree diversity and community composition in sacred forests are superior than the other community forests in a human-dominated landscape of Meghalaya. Tropical Ecology 61: 84-105.

Szymanska S, Borruso L, Brusetti L, Hulisz P, Furtado B and Hrynkiewicz K (2018) Bacterial microbiome of root- associated endophytes of Salicornia europaea in correspondence to different levels of salinity. Environmental Science and Pollution Research 25: 25420– 25431.

Vinayarani G and Prakash HS (2018) Fungal endophytes of turmeric (Curcuma longa L.) and their biocontrol potential against pathogens Pythium aphanidermatum and Rhizoctonia solani. World Journal of Microbiology and Biotechnology 34(3): 49.

Vinayarani G and Prakash HS (2018) Growth promoting rhizospheric and endophytic bacteria from Curcuma longa

L. as biocontrol agents against rhizome rot and leaf blight diseases. Plant Pathology Journal 34(3): 218-235.

Wemheuer F, Kaiser K, Karlovsky P, Daniel R, Vidal S and Wemheuer B (2017) Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes. Scientific Reports 7(1): 14.

Yadav RK, Singh A and Singh NT (2021) Historic developments on management of salt-affected soils. In: Minhas PS, Yadav RK and Sharma PC (eds), Managing Salt-Affected Soils for Sustainable Agriculture, New Delhi, ICAR, pp 12–25.

Zuniga A, Poupin MJ, Donoso R, Ledger T, Guiliani N, Gutierrez RA and Gonzalez B (2013) Quorum sensing and indole-3-acetic acid degradation play a role in colonization and plant growth promotion of Arabidopsis thaliana by Burkholderia phytofirmans PsJN. Molecular Plant-Microbe Interacition 26: 546-553.

Downloads

Submitted

2023-08-04

Published

2023-08-13

Issue

Section

Articles

How to Cite

Priyanka Chandra, Pooja Dhuli, Awtar Singh, Madhu Choudhary, Kailash Prajapat, AK Rai, & RK Yadav. (2023). Assessment of Endophytic Population and Diversity in Different Plants Growing in Saline Soils. Journal of Soil Salinity and Water Quality, 14(1), 98-107. https://epubs.icar.org.in/index.php/JoSSWQ/article/view/140250