Isolation, Molecular Characterization, and Therapeutic Evaluation of Bacteriophages Targeting Shiga Toxin-Producing Escherichia coli (STEC)
9
Keywords:
STEC phage, Phage Therapy, AMRAbstract
Bacteriophages offer a promising alternative for controlling pathogenic drug-resistant bacteria. Shiga toxin-producing Escherichia coli (STEC), a significant foodborne pathogen with zoonotic potential, poses health risks through contaminated food sources. This study aimed to isolate phages against STEC from twenty-three sewage samples, including those from poultry, swine, cattle farms, and hospitals sources. A total number of twenty-two STEC isolates were biochemically and molecularly characterized. Molecular detection of Shiga toxin producing genes revealed that 86.36% (19/22) had the stx1 gene and 50% (11/22) had the eae gene. None had stx2 or a combination of stx1 and stx2 genes. Thirteen lytic bacteriophages were isolated against the indicator strain (ATCC 2469), with twelve showing lytic activity against STEC isolates. In order to determine the lytic spectrum, these twelve phages were tested on 66 E. coli isolates (22 STEC and 44 non-STEC). Phages (n=5) showing highest lysis i.e. >=22.72% (15/66), were morphologically characterized via Transmission Electron Microscopy (TEM), followed by stability testing across various range of temperature and pH. Three phages belonged to Podoviridae and two belonged to Siphoviridae families. The phages were found stable at a wide range of temperature (-20°C to 37°C) and pH (4 to 9), with optimal stability observed at 4°C and pH 7.5. Phage Ecp10, exhibiting the highest lytic range (33.33%, 22/66), was tested in spiked milk samples at different MOIs. The highest reduction in bacterial count was recorded at MOI 0.1 after 6 hours of incubation. This study indicates that Ecp10 can be a promising decontaminating agent in milk and a potential treatment for STEC infections in animals and humans.
Downloads
References
Deka, R. P., Magnusson, U., Grace, D., & Lindahl, J. (2018). Bovine brucellosis: prevalence, risk factors, economic cost and control options with particular reference to India-a review. Infection Ecology & Epidemiology, 8(1), 1556548. https://doi.org/10.1080/20008686.2018.1556548
Wang, S., Wang, W., Sun, K., Bateer, H., & Zhao, X. (2020). Comparative genomic analysis between newly sequenced Brucella abortus vaccine strain A19 and another Brucella abortus vaccine S19. Genomics, 112(2), 1444-1453. https://doi.org/10.1016/j.ygeno.2019.08.015
Dorneles, E. M., Sriranganathan, N., & Lage, A. P. (2015). Recent advances in Brucella abortus vaccines. Veterinary research, 46(1), 76. https://doi.org/10.1186/s13567-015-0199-7
Saidu, A. S., Singh, M., Kumar, A., Mahajan, N. K., Mittal, D., Chhabra, R.,& Sadiq, U. (2022). Studies on intra-ocular vaccination of adult cattle with reduced dose Brucella abortus strain-19 vaccine. Heliyon, 8(2). https://doi.org/10.1016/j.heliyon.2022.e08937
Capparelli, R., Parlato, M., Iannaccone, M., Roperto, S., Marabelli, R., Roperto, F., & Iannelli, D. (2009). Heterogeneous shedding of Brucella abortus in milk and its effect on the control of animal brucellosis. Journal of applied microbiology, 106(6), 2041-2047. https://doi.org/10.1111/j.1365-2672.2009.04177.x
Kaynak-Onurdag, F., Okten, S., & Sen, B. (2016). Screening Brucella spp. in bovine raw milk by real-time quantitative PCR and conventional methods in a pilot region of vaccination, Edirne, Turkey. Journal of dairy science, 99(5), 3351-3357. https://doi.org/10.3168/jds.2015-10637
Wallach, J. C., Ferrero, M. C., Delpino, M. V., Fossati, C. A., & Baldi, P. C. (2008). Occupational infection due to Brucella abortus S19 among workers involved in vaccine production in Argentina. Clinical microbiology and infection, 14(8), 805-807. https://doi.org/10.1111/j.1469-0691.2008.02029.x.
Nicoletti, P. (1981). The epidemiology of bovine brucellosis Adv. Vet. Sci. Comp. Med., 24 (1980), pp. 69-98
Ohtsuki, R., Kawamoto, K., Kato, Y., Shah, M. M., Ezaki, T., & Makino, S. I. (2008). Rapid detection of Brucella spp. by the loop‐mediated isothermal amplification method. Journal of applied microbiology, 104(6), 1815-1823. https://doi.org/10.1111/j.1365-2672.2008.03732.x.
Karthik, K., Rathore, R., Thomas, P., Arun, T. R., Viswas, K. N., Dhama, K., & Agarwal, R. (2014). New closed tube loop mediated isothermal amplification assay for prevention of product cross-contamination. MethodsX, 1, 137-143. https://doi.org/10.1016/j.mex.2014.08.009.
Moeini-Zanjani, A., Pournajaf, A., Ferdosi-Shahandashti, E., Gholami, M., Masjedian, F., Khafri, S., & Rajabnia, R. (2020). Comparison of loop-mediated isothermal amplification and conventional PCR tests for diagnosis of common Brucella species. BMC research notes, 13(1), 533. https://doi.org/10.1186/s13104-020-05377-8.
Mishra, A., Thomas, P., Jeena, L. M., Doimari, S., Rajagunalan, S., Sahoo, A. P., & Singh, D. K. (2021). A novel close-tube loop mediated isothermal amplification (Lamp) assay for rapid detection of Brucella. Indian Journal of Animal Research, 55(7), 831-838. https://doi.org/10.18805/IJAR.B-4126.
Vergara, A., Boutal, H., Ceccato, A., López, M., Cruells, A., Bueno-Freire, L., & Vila, J. (2020). Assessment of a loop-mediated isothermal amplification (LAMP) assay for the rapid detection of pathogenic bacteria from respiratory samples in patients with hospital-acquired pneumonia. Microorganisms, 8(1), 103. https://doi.org/10.3390/microorganisms8010103.
Yin-Bo, Y., Dong-Liang, L., Bo-Han, Y., Zhao, Z., Si-Yao, M., Bao-Shan, L., & Ze-Liang, C. (2022). Establishment of loop-mediated isothermal amplification for Brucella detection using a warmer pad as a heating source. BioTechniques, 73(3), 142-150. https://doi.org/10.2144/btn-2021-0043.
Augustine, R., Hasan, A., Das, S., Ahmed, R., Mori, Y., Notomi, T.,& Thakor, A. S. (2020). Loop-mediated isothermal amplification (LAMP): a rapid, sensitive, specific, and cost-effective point-of-care test for coronaviruses in the context of COVID-19 pandemic. Biology, 9(8), 182. https://doi.org/10.3390/biology9080182.
Kumar, T. S., Radhika, K., Rajan, J. J. S., Makesh, M., Alavandi, S. V., & Vijayan, K. K. (2021). Closed-tube field-deployable loop-mediated isothermal amplification (LAMP) assay based on spore wall protein (SWP) for the visual detection of Enterocytozoon hepatopenaei (EHP). Journal of Invertebrate Pathology, 183, 107624. https://doi.org/10.1016/j.jip.2021.107624.
Ali, A., Waris, A., Khan, M. A., Asim, M., Khan, A. U., Khan, S., & Zeb, J. (2023). Recent advancement, immune responses, and mechanism of action of various vaccines against intracellular bacterial infections. Life Sciences, 314, 121332.
Mu, J., Li, Q., Yan, X., Mao, X., Shi, Y., Qin, Y., ... & Wang, W. (2022). Detection of Brucella S2 vaccine strain by a loop-mediated isothermal amplification (LAMP) method. Frontiers in Cellular and Infection Microbiology, 12, 1023243.
Karthik, K., Rathore, R., Thomas, P., Viswas, K. N., Agarwal, R. K., Rekha, V., & Dhama, K. (2016). Rapid and visual loop mediated isothermal amplification (LAMP) test for the detection of Brucella spp. and its applicability in epidemiology of bovine brucellosis. Veterinarski Arhiv, 86(1), 35-47.
Baily, G. G., Krahn, J. B., Drasar, B. S., & Stoker, N. G. (1992). Detection of Brucella melitensis and Brucella abortus by DNA amplification. J Trop Med Hyg, 95(4), 271-275.
Hinić, V., Brodard, I., Thomann, A., Cvetnić, Ž., Makaya, P. V., Frey, J., & Abril, C. (2008). Novel identification and differentiation of Brucella melitensis, B. abortus, B. suis, B. ovis, B. canis, and B. neotomae suitable for both conventional and real-time PCR systems. Journal of microbiological methods, 75(2), 375-378. https://doi.org/10.1016/j.mimet.2008.07.002.
Romero, C., & Lopez-Goñi, I. (1999). Improved method for purification of bacterial DNA from bovine milk for detection of Brucella spp. by PCR. Applied and environmental microbiology, 65(8), 3735-3737.
Sambrook, J., & Russell, D. W. (2006). Purification of nucleic acids by extraction with phenol: chloroform. Cold Spring Harbor Protocols, 2006(1), pdb-prot4455. https://doi.org/10.1101/pdb.prot4455.
Marouf, A. S., Hanifian, S., & Shayegh, J. (2021). Prevalence of Brucella spp. in raw milk and artisanal cheese tested via real-time qPCR and culture assay. International journal of food microbiology, 347, 109192. https://doi.org/10.1016/j.ijfoodmicro.2021.109192.
Singh, B. B., Dhand, N. K., & Gill, J. P. S. (2015). Economic losses occurring due to brucellosis in Indian livestock populations. Preventive veterinary medicine, 119(3-4), 211-215. https://doi.org/10.1016/j.prevetmed.2015.03.013.
López-Santiago, R., Sánchez-Argáez, A. B., De Alba-Núñez, L. G., Baltierra-Uribe, S. L., & Moreno-Lafont, M. C. (2019). Immune response to mucosal brucella infection. Frontiers in immunology, 10, 1759. https://doi.org/10.3389/fimmu.2019.01759.
Arenas-Gamboa, A. M., Ficht, T. A., Kahl-McDonagh, M. M., Gomez, G., & Rice-Ficht, A. (2009). The Brucella abortus S19 Δ vjbR live vaccine candidate is safer than S19 and confers protection against wild-type challenge in BALB/c mice when delivered in a sustained-release vehicle. Infection and immunity, 77(2), 877-884. https://doi.org/10.1128/IAI.01017-08.
Yang, X., Skyberg, J. A., Cao, L., Clapp, B., Thornburg, T., & Pascual, D. W. (2013). Progress in Brucella vaccine development. Frontiers in biology, 8(1), 60-77.
McDiarmid, A. (1957). The degree and duration of immunity in cattle resulting from vaccination with S. 19 Br. abortus vaccine and its implication in the future control and eventual eradication of brucellosis.Vet. Rec. (2013) 877–879.
Weynants, V., Tibor, A., Denoel, P. A., Saegerman, C., Godfroid, J., Thiange, P., & Letesson, J. J. (1996). Infection of cattle with Yersinia enterocolitica O: 9 a cause of the false positive serological reactions in bovine brucellosis diagnostic tests. Veterinary Microbiology, 48(1-2), 101-112. https://doi.org/10.1016/0378-1135(95)00153-0.
Alton, G.G. (1988). Techniques for the brucellosis laboratory, Institut national de la recherche agronomique, Paris.
Song, L., Li, J., Hou, S., Li, X., & Chen, S. (2012). Establishment of loop-mediated isothermal amplification (LAMP) for rapid detection of Brucella spp. and application to milk and blood samples. Journal of microbiological methods, 90(3), 292-297. https://doi.org/10.1016/j.mimet.2012.05.024.
Prusty, B. R., Chaudhuri, P., Chaturvedi, V. K., Saini, M., Mishra, B. P., & Gupta, P. K. (2016). Visual detection of Brucella spp. in spiked bovine semen using loop-mediated isothermal amplification (LAMP) assay. Indian journal of microbiology, 56(2), 142-147. https://doi.org/10.1007/s12088-015-0563-3.
Avendaño, C., & Patarroyo, M. A. (2020). Loop-mediated isothermal amplification as point-of-care diagnosis for neglected parasitic infections. International Journal of Molecular Sciences, 21(21), 7981. https://doi.org/10.3390/ijms21217981.
Das, A., Kumar, B., Chakravarti, S., Prakash, C., Singh, R. P., Gupta, V., ... & Shrinet, G. (2018). Rapid visual isothermal nucleic acid‐based detection assay of Brucella species by polymerase spiral reaction. Journal of applied microbiology, 125(3), 646-654. https://doi.org/10.1111/jam.13882.
Ashmi, M., Kumar, B., Agrawal, R. K., Prakash, C., & Singh, K. P. (2021). Development of BruAb2_0168 based isothermal polymerase spiral reaction assay for specific detection of Brucella abortus in clinical samples. Molecular and cellular probes, 59, 101761.
Trangoni, M. D., Gioffré, A. K., Cerón Cucchi, M. E., Caimi, K. C., Ruybal, P., Zumárraga, M. J., & Cravero, S. L. (2015). LAMP technology: Rapid identification of Brucella and Mycobacterium avium subsp. paratuberculosis. Brazilian Journal of Microbiology, 46(2), 619-626. https://doi.org/10.1590/S1517-838246220131206.
Moosavian, M., Keshavarzi, R., Abbasi Montazeri, E., & Hajiani, E. (2022). Loop mediated isothermal amplification of Clostridioides difficile isolates in gastrointestinal patients. AMB Express, 12(1), 42. https://doi.org/10.1186/s13568-022-01382-1.
Graves, R. R. (1943). The story of John M. Buck’s and Matilda’s contribution to the cattle industry. J Am Vet Med Assoc, 102(1943), 193-195.
Nicoletti, P., Nielsen, K., Duncan, J.R., (1990). Vaccination. Animal Brucellosis Boca Raton: CRC Press. (1990) 284–299.
Nicoletti, P. (1990). Vaccination, chap. 11. Animal Brucellosis. CRC Press, Boca Raton.
Sangari, F. J., García-Lobo, J. M., & Agüero, J. (1994). The Brucella abortus vaccine strain B19 carries a deletion in the erythritol catabolic genes. FEMS Microbiology Letters, 121(3), 337-342.
Smith, H., Williams, A. E., Pearce, J. H., Keppie, J., Harris-Smith, P. W., Fitz-George, R. B., & Witt, K. (1962). Foetal erythritol: a cause of the localization of Brucella abortus in bovine contagious abortion. Nature 193 (1962) 47–49.
Liu, D. F., Liu, C. G., Tian, J., Jiang, Y. T., Zhang, X. Z., Chai, H. L., ... & Qu, L. D. (2015). Establishment of reverse transcription loop-mediated isothermal amplification for rapid detection and differentiation of canine distemper virus infected and vaccinated animals. Infection, Genetics and Evolution, 32, (2015) 102-106.
Nemoto, M., Tsujimura, K., Yamanaka, T., Kondo, T., & Matsumura, T. (2010). Loop-mediated isothermal amplification assays for detection of Equid herpesvirus 1 and 4 and differentiating a gene-deleted candidate vaccine strain from wild-type Equid herpesvirus 1 strains. Journal of Veterinary Diagnostic Investigation, 22(1), 30-36.
Lin, Z., Zhang, Y., Zhang, H., Zhou, Y., Cao, J., & Zhou, J. (2012). Comparison of loop-mediated isothermal amplification (LAMP) and real-time PCR method targeting a 529-bp repeat element for diagnosis of toxoplasmosis. Veterinary parasitology, 185(2-4), 296-300.
Wang, X., Wang, G., Wang, Y., Quan, S., Qi, H., Sun, L., & Shen, A. (2021). Development and preliminary application of multiplex loop-mediated isothermal amplification coupled with lateral flow biosensor for detection of mycobacterium tuberculosis complex. Frontiers in cellular and infection microbiology, 11, 666492. https://doi.org/10.3389/fcimb.2021.666492.
Yang, X., Wang, Y., Liu, Y., Huang, J., Tan, Q., Ying, X., & Li, S. (2021). A label-based polymer nanoparticles biosensor combined with loop-mediated isothermal amplification for rapid, sensitive, and highly specific identification of Brucella abortus. Frontiers in Bioengineering and Biotechnology, 9, 758564. https://doi.org/10.3389/fbioe.2021.758564.
Garcell, H. G., Garcia, E. G., Pueyo, P. V., Martín, I. R., Arias, A. V., & Serrano, R. N. A. (2016). Outbreaks of brucellosis related to the consumption of unpasteurized camel milk. Journal of infection and public health, 9(4), 523-527. doi: 10.1016/j.jiph.2015.12.006.
Submitted
Published
Issue
Section
License
Copyright (c) 2026 The Indian Journal of Animal Sciences

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
The copyright of the articles published in The Indian Journal of Animal Sciences is vested with the Indian Council of Agricultural Research, which reserves the right to enter into any agreement with any organization in India or abroad, for reprography, photocopying, storage and dissemination of information. The Council has no objection to using the material, provided the information is not being utilized for commercial purposes and wherever the information is being used, proper credit is given to ICAR.