Standardisation of loop mediated isothermal amplification assay for rapid detection of New Duck disease
DOI:
https://doi.org/10.56093/ijans.v87i8.73460Keywords:
Loop mediated isothermal amplification, New Duck disease, Riemerella anatipestiferAbstract
In the present study, a loop-mediated isothermal amplification assay targeting the ompA gene of R. anatipestifer was standardised using three freeze dried isolates of the organism. The reaction could be completed in a short time i.e. approximately an hour, as compared to PCR which requires about 3 h for completion. The whole isothermal reaction was performed in a simple water bath and the positive reaction could be detected with naked eye, thereby confirming that no expensive equipment is needed for the diagnosis of the pathogen effectively. This technique could be mastered by veterinarians and laboratory technicians very easily compared to PCR; thereby reducing the time lag in reaching a confirmative diagnosis. This assay could be carried out in a local laboratory without any special equipment and high edge facilities.Once properly standardized, the LAMP assay serves as a very simple, rapid and effective pen-side diagnostic technique. It has the potential to revolutionize the field of human and veterinary disease diagnosis, thereby aiding in adopting prompt control and therapeutic strategies.
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Dhama K, Karthik K, Chakraborty S, Tiwari R, Kapoor S, Kumar A and Thomas P. 2014. Loop-mediated Isothermal Amplification of DNA (LAMP): a new diagnostic tool lights the world of diagnosis of animal and human pathogens: a review. Pakistan Journal of Biological Sciences 17: 151–66. DOI: https://doi.org/10.3923/pjbs.2014.151.166
Geojith G, Dhanasekaran S, Chandran S P and Kenneth J. 2011. Efficacy of loop mediated isothermal amplification (LAMP) assay for the laboratory identification of Mycobacterium tuberculosis isolates in a resource limited setting. Journal of Microbiological Methods 84: 71–73. DOI: https://doi.org/10.1016/j.mimet.2010.10.015
Han X, Ding C, He L, Hu Q and Yu S. 2011. Development of loop-mediated isothermal amplification (LAMP) targeting the GroEL Gene for rapid detection of Riemerella anatipestifer. Avian Diseases 55: 379–83. DOI: https://doi.org/10.1637/9602-112610-Reg.1
Lee D, Kim E J, Kilgore P E, Kim S A, Takahashi H, Ohnishi M, Anh D D, Dong B Q, Kim J S, Tomono J, Miyamoto S, Notomi T, Kim D W and Seki M. 2015. Clinical evaluation of a loop- mediated isothermal amplification (LAMP) assay for rapid detection of Neisseria meningitidis in cerebrospinal fluid. PLos One10: e0122922. DOI: https://doi.org/10.1371/journal.pone.0122922
Pala S and Radhakrishnan U. 2014. Genomic diversity of Riemerella anatipestifer associated with outbreaks of New Duck disease in India. Indian Journal of Animal Sciences 84: 1166–70.
Pala S, Nair U R, Somu C and Mahendran M. 2013. Molecular diagnosis of New Duck Disease in India by 16S rRNA gene based PCR. Advances in Animal and Veterinary Sciences 1: 140 – 42.
Parida M, Sannarangaiah S, Dash P K, Rao P V L and Morita K. 2008. Loop mediated isothermal amplification (LAMP): a new generation of innovative gene amplification technique; perspectives in clinical diagnosis of infectious diseases. Reviews in Medical Virology 18: 407–21. DOI: https://doi.org/10.1002/rmv.593
Rekha V, Rana R, Arun T R, Aswathi P B, John J K, Gopinath D, Sadanandan G V and Jacob A. 2014. Loop mediated isothermal amplification (LAMP) test–a novel nucleic acid based assay for disease diagnosis. Advances in Animal and Veterinary Sciences 26: 344 – 50. DOI: https://doi.org/10.14737/journal.aavs/2014/2.6.344.350
Rodriguez J M. 1997. Detection of animal pathogens by using the polymerase chain reaction (PCR). Veterinary Journal 153: 287 – 305. DOI: https://doi.org/10.1016/S1090-0233(97)80063-9
Somu C, Radhakrishnan U and Pala S. 2016. Outer membrane protein A gene based diagnosis of Riemerella anatipestifer infections in ducks. Advances in Animal and Veterinary Sciences 4: 527–35. DOI: https://doi.org/10.14737/journal.aavs/2016/4.10.527.535
Yang S and Rothman R E. 2004. PCR–based diagnostics for infectious diseases: uses, limitations, and future applications in acute–care settings. Lancet Infectious Diseases 4: 337– 48. DOI: https://doi.org/10.1016/S1473-3099(04)01044-8
Zheng F, Lin G, Zhou J, Wang G, Cao X, Gong X and Qiu C. 2011. Loop-mediated isothermal amplification assay targeting the ompA gene for rapid detection of Riemerella anatipestifer. Molecular and Cellular Probes 25: 65–67. DOI: https://doi.org/10.1016/j.mcp.2010.10.004
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