SNPs association studies in promoter III of the acetyl coenzyme-A carboxylase-α gene (ACACA) in Munjal–A threatened sheep population of India

Abu-Elheiga L, Jayakumar A, Baldini A, Chirala S S and Wakil S J. 1995. Human acetyl-CoA carboxylase: characterization molecular cloning, and evidence for two isoforms. Proceedings of the National Academy of Sciences USA 92: 4011–15. DOI: https://doi.org/10.1073/pnas.92.9.4011

Acharya R M. 1982. Sheep and Goat Breeds of India. FAO Animal Production and Health Paper 30. FAO, Rome, Italy.

Arora R and Bhatia S. 2004. Genetic structure of Muzaffarnagri sheep based on microsatellite analysis. Small Ruminant Research 54: 227–30. DOI: https://doi.org/10.1016/j.smallrumres.2003.11.015

Badaoui B, Serradilla J M, Tomas A, Urrutia B, Ares J L, Carrizosa J A, Sanchez A, Jordana J and Amills M. 2007. Goat acetylcoenzyme A carboxylase a: molecular characterization, polymorphism, and association with milk traits. Journal of Dairy Science 90: 1039–43. DOI: https://doi.org/10.3168/jds.S0022-0302(07)71590-4

Barber M and Travers M. 1998. Elucidation of a promoter activity that directs the expression of acetyl-CoA carboxylase with an alternative N-terminus in a tissue-restricted fashion. Biochemical Journal 333: 17–25. DOI: https://doi.org/10.1042/bj3330017

Barber M C and Travers M T. 1995. Cloning and characterisation of multiple acetyl-CoA carboxylase transcripts in ovine adipose tissue. Gene 154: 271–75. DOI: https://doi.org/10.1016/0378-1119(94)00871-O

Bhatia S and Arora R. 2005. Biodiversity and conservation of Indian sheep genetic resources-an overview. Asian Australasian Journal of Animal Science 18: 1387–1402. DOI: https://doi.org/10.5713/ajas.2005.1387

Crepaldi P, Nicoloso L, Coizet B, Milanesi E, Pagnacco G, Fresi P, Dimauro C and Macciotta N P P. 2013. Associations of acetylcoenzyme A carboxylase a, stearoyl-coenzyme A desaturase, and lipoprotein lipase genes with dairy traits in Alpine goats. Journal of Dairy Science 96(3): 1856–64. DOI: https://doi.org/10.3168/jds.2012-5978

Crisa A, Marchitelli C, Pariset L, Contarini G, Signorelli F, Napolitano F, Catillo G, Valentini A and Moioli B. 2010. Exploring polymorphisms and effects of candidate genes on milk fat quality in dairy sheep. Journal of Dairy Science 93: 3834–45. DOI: https://doi.org/10.3168/jds.2009-3014

Cronan John E and Waldrop Grover L. 2002. Multi-subunit acetyl- CoA carboxylases. Progress in Lipid Research 41(5): 407– 35. DOI: https://doi.org/10.1016/S0163-7827(02)00007-3

Garcýa-Fernandez M, Gutiarrez-Gil B, Garcia-Gamez E and Arranz J J. 2010. Identification of single nucleotide polymorphisms in the ovine acetyl-CoA carboxylase-alpha gene. Small Ruminant Research 90: 34–40. DOI: https://doi.org/10.1016/j.smallrumres.2009.12.010

Genomatix. 2008. Genomatix Software GmbH, Mu¨nchen, Germany. Available from www.genomatix.de.. A critical analysis of production-associated DNA polymorphisms in the genes of cattle, goat, sheep, and pig. Mammalian Genome 19(9): 591–617. DOI: https://doi.org/10.1007/s00335-008-9141-x

Jandal J M. 1996. Comparative aspects of goat and sheep milk. Small Ruminant Research 22: 177–85. DOI: https://doi.org/10.1016/S0921-4488(96)00880-2

Kumar D, Singh G and Jain A. 2006. Characterization and evaluation of Muzaffarnagri sheep. Indian Journal of Small Ruminants 12(1): 48–55.

Kushwaha B P, Singh R N and Parthasarathy S. 1999. Characteristics of Munjal sheep. Animal Genetic Resources Information 25: 27–31. DOI: https://doi.org/10.1017/S101423390000345X

Luo X, Park K, Lopez-Casillas F and Kim K H. 1989. Structural features of the acetyl-CoA carboxylase gene: mechanisms for the generation of mRNAs with 5’ end heterogeneity. Proceedings of the National Academy of Sciences USA 86: 4042–46. DOI: https://doi.org/10.1073/pnas.86.11.4042

Moioli B, D’Andrea M and Pilla F. 2007. Candidate genes affecting sheep and goat milk quality. Small Ruminant Research 68: 179–92. DOI: https://doi.org/10.1016/j.smallrumres.2006.09.008

Moioli B, Napolitano F, Orru L and Catillo G. 2005a. Single nucleotide polymorphism detection in Promoter I of the acetyl- CoA carboxylase-a gene in sheep. Small Ruminant Research 59: 49–53. DOI: https://doi.org/10.1016/j.smallrumres.2004.11.014

Moioli B, Napolitano F, Orru L and Catillo G. 2005b. Single nucleotide polymorphism detection in Promoter III of the acetyl- CoA carboxylase-a gene in sheep. Journal of Animal Breeding and Genetics 122: 418–20. DOI: https://doi.org/10.1111/j.1439-0388.2005.00550.x

NBAGR. 2017. Registered breeds of animal in India. http://www.nbagr.res.in/registeredbreed.html.

Ponce-Castaneda M V, Lopez-Casillas F and Kim K H. 1991. Acetyl-Coenzyme A carboxylase messenger ribonucleic acid metabolism in liver, adipose tissues, and mammary glands during pregnancy and lactation. Journal of Dairy Science 74(11): 4013–21. DOI: https://doi.org/10.3168/jds.S0022-0302(91)78596-2

Poonia J S. 2008. Reproductive performance of Munjal sheep. Indian Journal of Small Ruminants 14(1): 121–23.

SAS Institute Inc. 2007. SAS/STAT User’s Guide, Version 9.1. SAS Institute Inc., Cary, NC, USA.

Shashikanth P B. 1999. ‘Study on DNA polymorphism in cattle and buffalo.’ Ph.D. Thesis, NDRI (Deemed University), Karnal, India.

Sherman E L, Nkrumah J D, Murdoch B M, Li C, Wang Z, Fu A and Moore S S. 2008. Polymorphisms and haplotypes in the bovine NPY, GHR, GHRL, IGF2, UCP2, and UCP3 genes and their associations with measures of growth, performance, feed efficiency and carcass merit in beef cattle. Journal of Animal Science 86: 1–16. DOI: https://doi.org/10.2527/jas.2006-799

Signorelli F, Napolitano F, De Matteis G, Scatà Maria C, Catillo G, Tripaldi C and Moioli B. 2009. Identification of novel single nucleotide polymorphisms in promoter III of the Acetyl-CoA Carboxylase-a gene in goats affecting milk production traits. Journal of Heredity 100(3): 386–89. DOI: https://doi.org/10.1093/jhered/esn098

Travers M and Barber M. 2001. Acetyl-CoA carboxylase-a: gene structure function relationships. Journal of Animal Science 79(E. Suppl):136–43. DOI: https://doi.org/10.2527/jas2001.79E-SupplE136x

Travers M, Cambot M, Kennedy H, Lenoir G, Barber M and Joulin V. 2005. Asymmetric expression of transcripts derived from the shared promoter between the divergently oriented ACACA and TADA2L genes. Genomics 85: 71–84. DOI: https://doi.org/10.1016/j.ygeno.2004.10.001

Van Waveren C and Moraes C T. 2008. Transcriptional coexpression and coregulation of genes coding for components of the oxidative phosphorylation system. BMC Genomics 9: 18. DOI: https://doi.org/10.1186/1471-2164-9-18

Yadav D K, Arora R, Bhatia S and Singh G. 2009. Evaluation of Munjal sheep: A journey from identity crisis to extinction threat, pp. 200. Compendium of invited lectures and abstracts of National Symposium on Livestock Biodiversity Conservation and Utilization: Lessons from Past and Future Perspectives. National Bureau of Animal Genetic Resources, Karnal, India.

Yadav D K, Arora R, Bhatia S and Singh G. 2010a. Management and conservation of Munjal sheep: a threatened sheep population of north-west India. Journal of Livestock Biodiversity 2(1): 20–22.

Yadav D K, Arora R, Bhatia S and Singh G. 2011. Morphological characterization, production and reproduction status of Munjal- A threatened sheep population of North-West India. Indian Journal of Animal Sciences 81(9): 943–45.

Zhang S, Knight T J, Stalder K J, Goodwin R N, Lonergan S M and Beitz D C. 2009. Effects of breed, sex and halothane genotype on fatty acid composition of triacylglycerols and phospholipids in pork longissimus muscle. Journal of Animal Breeding and Genetics 126: 259–68. DOI: https://doi.org/10.1111/j.1439-0388.2008.00782.x